Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0581
         (343 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40947-5|AAC48070.1|  505|Caenorhabditis elegans Inward rectifyi...    80   4e-16
U58730-1|AAC48058.1|  514|Caenorhabditis elegans Inward rectifyi...    71   3e-13
Z78544-4|CAB01762.3|  374|Caenorhabditis elegans Hypothetical pr...    47   4e-06
U58748-3|AAB52966.3|  332|Caenorhabditis elegans Hypothetical pr...    30   0.50 
Z78019-6|CAB01453.2|  370|Caenorhabditis elegans Hypothetical pr...    28   1.5  
Z22180-7|CAE17863.1|  372|Caenorhabditis elegans Hypothetical pr...    28   2.0  
AL032626-16|CAA21542.1|  101|Caenorhabditis elegans Hypothetical...    27   3.5  
AL021180-2|CAA15981.2|  188|Caenorhabditis elegans Hypothetical ...    26   6.1  
AC025716-20|AAT39977.2|  946|Caenorhabditis elegans Hypothetical...    26   6.1  
Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical pr...    26   8.1  
AF077531-1|AAC64610.1|  374|Caenorhabditis elegans Hypothetical ...    26   8.1  

>U40947-5|AAC48070.1|  505|Caenorhabditis elegans Inward rectifying
           k (potassium)channel family protein 1 protein.
          Length = 505

 Score = 80.2 bits (189), Expect = 4e-16
 Identities = 40/105 (38%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
 Frame = +3

Query: 21  FGTRVAKRRRRYLQDIFTTLVDAQWRWTLLVXXXXXXXXXXXXXXXXXXXXXTHGDLT-P 197
           + T V K+ R+YL+DIFTT++D +WRW L++                      HGDL+ P
Sbjct: 86  YNTNVPKKDRQYLRDIFTTMIDVKWRWMLMLFASAFVLSWSIFGTTYYLIALVHGDLSLP 145

Query: 198 IPLTEQREPPVPCLNNVNSFTGCFLFSVETQHTIGYGSRTTNEEC 332
            P+         C+ N++S    FLF+VET HTIGYG R    EC
Sbjct: 146 TPVNH-----TACVMNLDSVYSSFLFAVETHHTIGYGHRYITTEC 185


>U58730-1|AAC48058.1|  514|Caenorhabditis elegans Inward rectifying
           k (potassium)channel family protein 2 protein.
          Length = 514

 Score = 70.5 bits (165), Expect = 3e-13
 Identities = 37/101 (36%), Positives = 48/101 (47%)
 Frame = +3

Query: 33  VAKRRRRYLQDIFTTLVDAQWRWTLLVXXXXXXXXXXXXXXXXXXXXXTHGDLTPIPLTE 212
           V K+RR+Y  DIFTT+++ +WRW LL                       HGD+  I    
Sbjct: 97  VPKQRRKYFSDIFTTVIEMKWRWCLLYFSLSFMISWSFFATVYFLIAKQHGDIEQI---- 152

Query: 213 QREPPVPCLNNVNSFTGCFLFSVETQHTIGYGSRTTNEECP 335
                 PC+ NV++    FLFS  TQ TIGYG R   + CP
Sbjct: 153 ANATWTPCIVNVHNELNAFLFSFTTQTTIGYGFRYPTDACP 193


>Z78544-4|CAB01762.3|  374|Caenorhabditis elegans Hypothetical
           protein K04G11.5 protein.
          Length = 374

 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 19/36 (52%), Positives = 25/36 (69%)
 Frame = +3

Query: 234 CLNNVNSFTGCFLFSVETQHTIGYGSRTTNEECPEA 341
           C+ NV++    FLFS+E+QHTIGYG R   + CP A
Sbjct: 115 CIANVDTLISAFLFSMESQHTIGYGLRYMTDLCPPA 150


>U58748-3|AAB52966.3|  332|Caenorhabditis elegans Hypothetical
           protein ZK180.2 protein.
          Length = 332

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
 Frame = -3

Query: 122 KRKH*QRPAPLGVH----EGREDVLKVSAPALSHPRAESC 15
           KR+H   P PLGV     EG  D L     ALSH  + SC
Sbjct: 27  KRRHGGIPLPLGVFTVQKEGFPDALPAIRTALSHVHSRSC 66


>Z78019-6|CAB01453.2|  370|Caenorhabditis elegans Hypothetical
           protein ZK863.1 protein.
          Length = 370

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = -1

Query: 184 P*VKIMSHQISANKSHERMKESANTSSVQRHWASTRVVKMS*RYRRLRLATLVPNP 17
           P V +  + +  N +    K    T+  Q H  S +V++MS    R+ L+T +P+P
Sbjct: 311 PLVPVNMYFLRQNITRSSRKLREKTTLQQEHSKSFQVLEMSNDQSRIPLSTTIPSP 366


>Z22180-7|CAE17863.1|  372|Caenorhabditis elegans Hypothetical
           protein K11H3.7 protein.
          Length = 372

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 252 SFTGCFLFSVETQHTIGYGS 311
           +FTG FL+S+    TIGYG+
Sbjct: 121 TFTGAFLYSLTVITTIGYGN 140


>AL032626-16|CAA21542.1|  101|Caenorhabditis elegans Hypothetical
           protein Y37D8A.19 protein.
          Length = 101

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +3

Query: 240 NNVNSFTGCFLFSVETQHTIGYGSRTTNEECPEA 341
           NN N F  CF  S           ++TN  C +A
Sbjct: 24  NNANRFPSCFACSTAAGFVANIDGQSTNARCTDA 57


>AL021180-2|CAA15981.2|  188|Caenorhabditis elegans Hypothetical
           protein F43C1.3 protein.
          Length = 188

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -3

Query: 275 KEEAASKGVDVVEAGNGWFSLFRKWNWGEVSVSENNEPPDKCEQEPRE 132
           K+E + K  D+ + G  +    +K+  G+ S  E  EP D  ++E  +
Sbjct: 53  KQELSGKKADISQKGEEYKEKMQKFLDGDWSGIEEGEPLDSDDEEQED 100


>AC025716-20|AAT39977.2|  946|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.18a protein.
          Length = 946

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -3

Query: 275 KEEAASKGVDVVEAGNG 225
           KEE  S  VDVV+ GNG
Sbjct: 27  KEERRSSSVDVVDVGNG 43


>Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical
           protein H06O01.2 protein.
          Length = 1461

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 203 WNWGEVSVSENNEPPDKCEQEPREDE 126
           WN  E S   + EP +K ++  RE+E
Sbjct: 2   WNQSESSSGSDAEPDEKTDEPVREEE 27


>AF077531-1|AAC64610.1|  374|Caenorhabditis elegans Hypothetical
           protein F13C5.2 protein.
          Length = 374

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
 Frame = -3

Query: 191 EVSVSENNEPPDKCEQEPREDEGKRKH*QRPAPLGVHEGREDVLK-----VSAPALSHPR 27
           E   +E  E PD+ E+E  EDE + +  +  +        +DV +      SAP   HP 
Sbjct: 264 EEKPAEEPEQPDEKEEEDHEDEREEQEEEDSSDEEDGLDDDDVRRHIPASTSAPVAKHPE 323

Query: 26  AESCSP 9
           A    P
Sbjct: 324 AAMPEP 329


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,076,789
Number of Sequences: 27780
Number of extensions: 163744
Number of successful extensions: 520
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)