Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0581
         (343 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   2.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   2.4  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    20   9.5  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    20   9.5  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    20   9.5  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 241  LRQGTGGSLCSVSGIG 194
            L +G GGSL  + G+G
Sbjct: 1702 LSEGGGGSLAGLGGLG 1717


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 241  LRQGTGGSLCSVSGIG 194
            L +G GGSL  + G+G
Sbjct: 1698 LSEGGGGSLAGLGGLG 1713


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 62  GHLHDPRGRPVAL 100
           G  HD +GRP+++
Sbjct: 540 GPKHDHQGRPISI 552


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 206 KWNWGEVSVSENNE 165
           KWN G  SV  +NE
Sbjct: 169 KWNEGPNSVGVSNE 182


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 206 KWNWGEVSVSENNE 165
           KWN G  SV  +NE
Sbjct: 108 KWNEGPNSVGVSNE 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,029
Number of Sequences: 438
Number of extensions: 1895
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7839909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)