Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0581
(343 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02680.1 68418.m00204 expressed protein 31 0.15
At3g18480.1 68416.m02348 CCAAT displacement protein-related / CD... 27 2.5
At1g20680.1 68414.m02590 expressed protein contains Pfam profile... 27 2.5
At1g10720.1 68414.m01221 BSD domain-containing protein contains ... 27 2.5
At5g27160.1 68418.m03241 hypothetical protein contains Pfam prof... 26 7.6
At3g13590.1 68416.m01711 DC1 domain-containing protein contains ... 26 7.6
At3g10420.2 68416.m01250 sporulation protein-related similar to ... 26 7.6
At3g10420.1 68416.m01249 sporulation protein-related similar to ... 26 7.6
At1g32830.1 68414.m04046 hypothetical protein similar to At2g049... 26 7.6
At4g08097.1 68417.m01316 hypothetical protein 25 10.0
At3g19000.1 68416.m02411 oxidoreductase, 2OG-Fe(II) oxygenase fa... 25 10.0
At1g02510.1 68414.m00202 outward rectifying potassium channel, p... 25 10.0
>At5g02680.1 68418.m00204 expressed protein
Length = 163
Score = 31.5 bits (68), Expect = 0.15
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -3
Query: 245 VVEAGNGWFSLFRKWNWGEVSVSENNEPPDKCEQEPR 135
+++ G+G S + W+WG++ E+N+ K E PR
Sbjct: 70 LLKKGDG--SFYVAWHWGKLDTDEDNQKTTKTESSPR 104
>At3g18480.1 68416.m02348 CCAAT displacement protein-related /
CDP-related similar to CCAAT displacement protein (CDP)
(Cut-like 1) (Swiss-Prot:P39880) [Homo sapiens];
contains Pfam:PF00904 Involucrin repeat
Length = 689
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -3
Query: 218 SLFRKWNWGEVSVSENNEPPDKCEQEPREDE 126
+LF +W + E V+E +EP D+ +D+
Sbjct: 477 ALFDEWEFSEAGVAEQSEPMDQKHVPSEQDQ 507
>At1g20680.1 68414.m02590 expressed protein contains Pfam profile
PF05742: Protein of unknown function (DUF833)
Length = 373
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 164 AHYFHSRRPHPNSTYGTER 220
A ++HSR HPN GT+R
Sbjct: 193 AVFYHSRDEHPNGKLGTQR 211
>At1g10720.1 68414.m01221 BSD domain-containing protein contains
Pfam profile PF03909: BSD domain
Length = 429
Score = 27.5 bits (58), Expect = 2.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 212 FRKWNWGEVSVSENNEPPDKCEQEPREDE 126
FR W+ E ++E N+P D+ E+E DE
Sbjct: 135 FRSWDLEE-KLAEGNDPEDEEEEEEETDE 162
>At5g27160.1 68418.m03241 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 702
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 200 NWGEVSVSENNEPPDKCEQEPRED 129
N EV+ EN + CEQEP E+
Sbjct: 28 NREEVAAEENKFEDENCEQEPPEN 51
>At3g13590.1 68416.m01711 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 513
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 228 VPCLNNVNSFTGCFLFSVETQHTIGYGSRTTNEEC 332
V +NN N F C SV QH+ G+ + E+C
Sbjct: 294 VDAMNNENGFFTC---SVCNQHSCGFMYKCCQEDC 325
>At3g10420.2 68416.m01250 sporulation protein-related similar to
hypothetical proteins: GB:P51281 [Chloroplast Porphyra
purpurea], GB:BAA16982 [Synechocystis sp], GB:P49540
[Odontella sinensis], GB:AAB82669 [Chloroplast Cyanidium
caldarium]; similar to stage III sporulation protein AA
(GI:18145497) [Clostridium perfringens str. 13]; similar
to stage III sporulation protein AA (mutants block
sporulation after engulfment) (GI:22777578)
[Oceanobacillus iheyensis]
Length = 684
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 180 HGDLTPIPLTEQREPPVPCLN 242
H +TPIPL E P P LN
Sbjct: 418 HKLVTPIPLENLEEEPAPLLN 438
>At3g10420.1 68416.m01249 sporulation protein-related similar to
hypothetical proteins: GB:P51281 [Chloroplast Porphyra
purpurea], GB:BAA16982 [Synechocystis sp], GB:P49540
[Odontella sinensis], GB:AAB82669 [Chloroplast Cyanidium
caldarium]; similar to stage III sporulation protein AA
(GI:18145497) [Clostridium perfringens str. 13]; similar
to stage III sporulation protein AA (mutants block
sporulation after engulfment) (GI:22777578)
[Oceanobacillus iheyensis]
Length = 547
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 180 HGDLTPIPLTEQREPPVPCLN 242
H +TPIPL E P P LN
Sbjct: 418 HKLVTPIPLENLEEEPAPLLN 438
>At1g32830.1 68414.m04046 hypothetical protein similar to At2g04970,
At2g15200, At2g14140, At3g30450, At4g03990, At5g34895,
At3g47270, At2g02200
Length = 707
Score = 25.8 bits (54), Expect = 7.6
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -3
Query: 188 VSVSENNEPPDKCEQEPREDEGKRKH*QRPAPLGVHEGREDVLK 57
V +E E P +C++E +EGK + + H+ DVLK
Sbjct: 433 VEETEKQENPKQCDEEMEREEGKEEKVEE------HDEYNDVLK 470
>At4g08097.1 68417.m01316 hypothetical protein
Length = 346
Score = 25.4 bits (53), Expect = 10.0
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = -1
Query: 244 LLRQGTGG-SLCSVSGIGVRSP*VKIMSHQISANKSHERMKE 122
L R G+G S+C+V + V P V ++ + I+A+ SH+ +++
Sbjct: 53 LCRFGSGSRSICAVGDVTV-VPGVVVLINTIAADDSHQLLRQ 93
>At3g19000.1 68416.m02411 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to SP|P24397 Hyoscyamine
6-dioxygenase (EC 1.14.11.11) (Hyoscyamine 6-beta-
hydroxylase) {Hyoscyamus niger}, SP|Q05965
Naringenin,2-oxoglutarate 3-dioxygenase (EC 1.14.11.9)
(Flavonone- 3-hydroxylase) (F3H) (FHT) {Matthiola
incana}; contains Pfam profile PF03171: oxidoreductase,
2OG-Fe(II) oxygenase family
Length = 352
Score = 25.4 bits (53), Expect = 10.0
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 212 FRKWNWGEVSVSENNEPPDKCEQE 141
++K+NWG+ VS N K E E
Sbjct: 320 YKKYNWGKFFVSRNRSDFKKLEVE 343
>At1g02510.1 68414.m00202 outward rectifying potassium channel,
putative (KCO4) similar to kco1 [Arabidopsis thaliana]
gi|2230761|emb|CAA69158; member of the 2 pore, 4
transmembrane (2P/4TM) K+ channel family, PMID:11500563
Length = 284
Score = 25.4 bits (53), Expect = 10.0
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 249 NSFTGCFLFSVETQHTIGYG 308
N F F FS+ T T+GYG
Sbjct: 66 NLFVDAFYFSIVTFSTVGYG 85
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,818,532
Number of Sequences: 28952
Number of extensions: 157392
Number of successful extensions: 470
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 409426656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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