Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0580
(585 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 140 7e-34
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 140 7e-34
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 116 1e-26
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 31 0.68
07_03_1414 - 26403361-26403969 29 2.7
07_03_1422 + 26462871-26463434,26463772-26463897 28 6.3
07_03_1413 - 26396426-26396890 28 6.3
04_01_0084 - 912255-912368,912738-912822,914050-917105,920290-92... 28 6.3
02_04_0587 + 24110333-24110584,24111193-24111261,24112347-241128... 28 6.3
09_06_0016 - 20240358-20240797,20241040-20241131,20241132-202412... 27 8.3
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 140 bits (339), Expect = 7e-34
Identities = 70/134 (52%), Positives = 86/134 (64%)
Frame = +3
Query: 183 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 362
NPLFEKRPK F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLD
Sbjct: 22 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 81
Query: 363 KTTAKVLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 542
K A LFK+L KYRPE +P ++ G N VT L+E
Sbjct: 82 KNLATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIE 140
Query: 543 KKKAQLVVIAHDVD 584
+ KAQLVVIAHDVD
Sbjct: 141 QSKAQLVVIAHDVD 154
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 140 bits (339), Expect = 7e-34
Identities = 70/134 (52%), Positives = 86/134 (64%)
Frame = +3
Query: 183 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 362
NPLFEKRPK F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLD
Sbjct: 6 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 65
Query: 363 KTTAKVLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 542
K A LFK+L KYRPE +P ++ G N VT L+E
Sbjct: 66 KNLATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIE 124
Query: 543 KKKAQLVVIAHDVD 584
+ KAQLVVIAHDVD
Sbjct: 125 QSKAQLVVIAHDVD 138
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 116 bits (280), Expect = 1e-26
Identities = 63/134 (47%), Positives = 82/134 (61%)
Frame = +3
Query: 183 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 362
NPLFEKRPK F IG + P +DL RFVRWPK +RIQRQ+ VL++RLKVPP +NQFT+TLD
Sbjct: 23 NPLFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLD 82
Query: 363 KTTAKVLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 542
K ++L++ + E +P ++ G + VT L+E
Sbjct: 83 KNLGCQKERLLKRAQAEA-----------------EGKTVEAKKPIVVKYGLDHVTYLIE 125
Query: 543 KKKAQLVVIAHDVD 584
+ KAQLVVIAHDVD
Sbjct: 126 QSKAQLVVIAHDVD 139
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 31.1 bits (67), Expect = 0.68
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 281 PHPAPEGCTSASSESAPSDQP 343
P PAPE +A+ E+APSD P
Sbjct: 53 PQPAPEEAPAAAEEAAPSDDP 73
>07_03_1414 - 26403361-26403969
Length = 202
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -2
Query: 293 ALDADILGPSYKSGQVTSWLNALTNSKVLWPLLEERIHDLLGLNLFD 153
AL A + P + G++ + + +T + L P LEE + GL L+D
Sbjct: 76 ALSAAVSNPGFFFGRMVVFNDPVTEGRALPPSLEETVVRAQGLYLYD 122
>07_03_1422 + 26462871-26463434,26463772-26463897
Length = 229
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 293 ALDADILGPSYKSGQVTSWLNALTNSKVLWPLLEERIHDLLGLNLFD 153
AL + P Y G+V + + +T + L P LEE GL L D
Sbjct: 74 ALSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 120
>07_03_1413 - 26396426-26396890
Length = 154
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 293 ALDADILGPSYKSGQVTSWLNALTNSKVLWPLLEERIHDLLGLNLFD 153
AL + P Y G+V + + +T + L P LEE GL L D
Sbjct: 28 ALSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 74
>04_01_0084 -
912255-912368,912738-912822,914050-917105,920290-920508
Length = 1157
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -2
Query: 482 RLIFLGNLSFSSFPQPLFPGCFSLRPVFLQNL-EKDLSCS 366
R+I L +FS F P F GC SLR + L +KD CS
Sbjct: 393 RVINLSQCTFS-FTSPPFLGCSSLRFLLLDRCKDKDKLCS 431
>02_04_0587 +
24110333-24110584,24111193-24111261,24112347-24112850,
24113094-24113336
Length = 355
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -1
Query: 228 PDQ*QSSLASSRREDSRSSWAQPF*PPMGRR 136
P SSLA +RR +R AQP PP RR
Sbjct: 24 PSSAASSLAFARRAAARPLRAQPLLPPAARR 54
>09_06_0016 -
20240358-20240797,20241040-20241131,20241132-20241250,
20241398-20241561,20241664-20241757,20242048-20242080,
20242361-20242478,20242712-20242812,20242882-20242962,
20243138-20243335,20243411-20243545,20243662-20243667,
20243727-20243805,20243845-20243896,20244328-20244388,
20244475-20244532,20245137-20245225,20246305-20246799
Length = 804
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 467 QER*ASTKEAQHHPIRHKHSHQAGREEEGAACGHR 571
QER A + + H RH H H A + + GHR
Sbjct: 685 QER-ARRRHKRAHSHRHSHHHDAHKRHKTELAGHR 718
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,077,332
Number of Sequences: 37544
Number of extensions: 261325
Number of successful extensions: 884
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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