Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0580
         (585 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)             155   3e-38
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)        57   9e-09
SB_46996| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_57776| Best HMM Match : EB (HMM E-Value=2.9)                        29   3.7  
SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)           28   4.9  
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  

>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score =  155 bits (376), Expect = 3e-38
 Identities = 74/134 (55%), Positives = 89/134 (66%)
 Frame = +3

Query: 183 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 362
           NPL EKRP+NF IG  IQP RDLSRFVRWP+Y+++QRQK++L +RLKVPP INQFTQ LD
Sbjct: 29  NPLIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALD 88

Query: 363 KTTAKVLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 542
           + +   LFK+L KYRPET                         +P  ++ G N +T LVE
Sbjct: 89  RQSTVQLFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVE 148

Query: 543 KKKAQLVVIAHDVD 584
            KKAQLVVIAHDVD
Sbjct: 149 NKKAQLVVIAHDVD 162


>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
          Length = 172

 Score = 57.2 bits (132), Expect = 9e-09
 Identities = 30/68 (44%), Positives = 35/68 (51%)
 Frame = +3

Query: 381 LFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVEKKKAQL 560
           LFK+L KYRPET                         +P  ++ G N +T LVE KKAQL
Sbjct: 4   LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQL 63

Query: 561 VVIAHDVD 584
           VVIAHDVD
Sbjct: 64  VVIAHDVD 71


>SB_46996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +2

Query: 176 DRESSLREEAKELCYWSGHSANS*LVQ-ICKMAQVYPHPAPEGCTSASSESAPSDQPI 346
           DR  ++ E  KE+CYW GH   + + + + +  +          T+++SE   S +P+
Sbjct: 137 DRRKNMEERHKEMCYW-GHKFETYVTKLVSERGKRETVMGASTSTASTSEGGASAKPV 193


>SB_57776| Best HMM Match : EB (HMM E-Value=2.9)
          Length = 669

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +2

Query: 176 DRESSLREEAKELCYWSGHSANS*LVQ-ICKMAQVYPHPAPEGCTSASSESAPSDQPI 346
           DR  ++ E  KE+CYW GH   + + + + +  +          T++ SE   S +P+
Sbjct: 187 DRRKNMEERHKEMCYW-GHKFETYVTKLVSERGKRETVMGASTSTASKSEGGASAKPV 243


>SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)
          Length = 212

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 494 PLWWRLIFLGNLSFSSFPQPLFPG 423
           P WW ++F+G + FS     L+PG
Sbjct: 56  PKWWFMLFIGTIVFSIGYLVLYPG 79


>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +2

Query: 305 TSASSESAPSDQPIYPDTG 361
           T+ASSE+APS  P  PD G
Sbjct: 43  TAASSEAAPSSAPSMPDYG 61


>SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 832

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +3

Query: 252 SRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFT---QTLDKTTAKVLFK 389
           SR  RW  Y R+   KA+LQR  ++   I Q T   + L+K +  VL +
Sbjct: 508 SRTFRWDPYSRMSTLKALLQRMEQLKTQIVQETCEIKKLEKLSRLVLLR 556


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,421,519
Number of Sequences: 59808
Number of extensions: 270356
Number of successful extensions: 720
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)