Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0580
         (585 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X82782-1|CAA58023.1|  271|Drosophila melanogaster ribosomal prot...   184   8e-47
AY089570-1|AAL90308.1|  271|Drosophila melanogaster RE05022p pro...   184   8e-47
AE014298-903|AAF46169.1|  271|Drosophila melanogaster CG3314-PD,...   184   8e-47
AE014298-902|AAN09172.1|  271|Drosophila melanogaster CG3314-PC,...   184   8e-47
AE014298-901|AAN09170.1|  271|Drosophila melanogaster CG3314-PA,...   184   8e-47
M89628-1|AAB00734.1|  661|Drosophila melanogaster retinal degene...    29   3.5  
BT015959-1|AAV36844.1|  603|Drosophila melanogaster RH46370p pro...    29   3.5  
AE014296-3312|AAF49044.2|  603|Drosophila melanogaster CG6571-PA...    29   3.5  
AE014296-3311|AAO41219.1|  661|Drosophila melanogaster CG6571-PD...    29   3.5  
AE014296-3310|AAO41218.1|  661|Drosophila melanogaster CG6571-PC...    29   3.5  
AE014296-3309|AAO41217.1|  661|Drosophila melanogaster CG6571-PB...    29   3.5  

>X82782-1|CAA58023.1|  271|Drosophila melanogaster ribosomal protein
           L7a protein.
          Length = 271

 Score =  184 bits (448), Expect = 8e-47
 Identities = 88/134 (65%), Positives = 101/134 (75%)
 Frame = +3

Query: 183 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 362
           N LFEKRPKNF IGQ +QP RDLSRFVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLD
Sbjct: 34  NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLD 93

Query: 363 KTTAKVLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 542
           KTTA  LFK+LEKYRPE+                         +P+ + +GTNTVTKL+E
Sbjct: 94  KTTAVKLFKLLEKYRPESALAKNVRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIE 153

Query: 543 KKKAQLVVIAHDVD 584
           +KKAQLVVIAHDVD
Sbjct: 154 QKKAQLVVIAHDVD 167


>AY089570-1|AAL90308.1|  271|Drosophila melanogaster RE05022p
           protein.
          Length = 271

 Score =  184 bits (448), Expect = 8e-47
 Identities = 88/134 (65%), Positives = 101/134 (75%)
 Frame = +3

Query: 183 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 362
           N LFEKRPKNF IGQ +QP RDLSRFVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLD
Sbjct: 34  NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLD 93

Query: 363 KTTAKVLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 542
           KTTA  LFK+LEKYRPE+                         +P+ + +GTNTVTKL+E
Sbjct: 94  KTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIE 153

Query: 543 KKKAQLVVIAHDVD 584
           +KKAQLVVIAHDVD
Sbjct: 154 QKKAQLVVIAHDVD 167


>AE014298-903|AAF46169.1|  271|Drosophila melanogaster CG3314-PD,
           isoform D protein.
          Length = 271

 Score =  184 bits (448), Expect = 8e-47
 Identities = 88/134 (65%), Positives = 101/134 (75%)
 Frame = +3

Query: 183 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 362
           N LFEKRPKNF IGQ +QP RDLSRFVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLD
Sbjct: 34  NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLD 93

Query: 363 KTTAKVLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 542
           KTTA  LFK+LEKYRPE+                         +P+ + +GTNTVTKL+E
Sbjct: 94  KTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIE 153

Query: 543 KKKAQLVVIAHDVD 584
           +KKAQLVVIAHDVD
Sbjct: 154 QKKAQLVVIAHDVD 167


>AE014298-902|AAN09172.1|  271|Drosophila melanogaster CG3314-PC,
           isoform C protein.
          Length = 271

 Score =  184 bits (448), Expect = 8e-47
 Identities = 88/134 (65%), Positives = 101/134 (75%)
 Frame = +3

Query: 183 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 362
           N LFEKRPKNF IGQ +QP RDLSRFVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLD
Sbjct: 34  NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLD 93

Query: 363 KTTAKVLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 542
           KTTA  LFK+LEKYRPE+                         +P+ + +GTNTVTKL+E
Sbjct: 94  KTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIE 153

Query: 543 KKKAQLVVIAHDVD 584
           +KKAQLVVIAHDVD
Sbjct: 154 QKKAQLVVIAHDVD 167


>AE014298-901|AAN09170.1|  271|Drosophila melanogaster CG3314-PA,
           isoform A protein.
          Length = 271

 Score =  184 bits (448), Expect = 8e-47
 Identities = 88/134 (65%), Positives = 101/134 (75%)
 Frame = +3

Query: 183 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 362
           N LFEKRPKNF IGQ +QP RDLSRFVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLD
Sbjct: 34  NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLD 93

Query: 363 KTTAKVLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 542
           KTTA  LFK+LEKYRPE+                         +P+ + +GTNTVTKL+E
Sbjct: 94  KTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIE 153

Query: 543 KKKAQLVVIAHDVD 584
           +KKAQLVVIAHDVD
Sbjct: 154 QKKAQLVVIAHDVD 167


>M89628-1|AAB00734.1|  661|Drosophila melanogaster retinal
           degeneration C protein protein.
          Length = 661

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 492 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVD 584
           RP+  ++ T+ VT L +K     +V+ HD+D
Sbjct: 617 RPSVAKTATDPVTLLADKISKNTLVVEHDID 647


>BT015959-1|AAV36844.1|  603|Drosophila melanogaster RH46370p
           protein.
          Length = 603

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 492 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVD 584
           RP+  ++ T+ VT L +K     +V+ HD+D
Sbjct: 559 RPSVAKTATDPVTLLADKISKNTLVVEHDID 589


>AE014296-3312|AAF49044.2|  603|Drosophila melanogaster CG6571-PA,
           isoform A protein.
          Length = 603

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 492 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVD 584
           RP+  ++ T+ VT L +K     +V+ HD+D
Sbjct: 559 RPSVAKTATDPVTLLADKISKNTLVVEHDID 589


>AE014296-3311|AAO41219.1|  661|Drosophila melanogaster CG6571-PD,
           isoform D protein.
          Length = 661

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 492 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVD 584
           RP+  ++ T+ VT L +K     +V+ HD+D
Sbjct: 617 RPSVAKTATDPVTLLADKISKNTLVVEHDID 647


>AE014296-3310|AAO41218.1|  661|Drosophila melanogaster CG6571-PC,
           isoform C protein.
          Length = 661

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 492 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVD 584
           RP+  ++ T+ VT L +K     +V+ HD+D
Sbjct: 617 RPSVAKTATDPVTLLADKISKNTLVVEHDID 647


>AE014296-3309|AAO41217.1|  661|Drosophila melanogaster CG6571-PB,
           isoform B protein.
          Length = 661

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 492 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVD 584
           RP+  ++ T+ VT L +K     +V+ HD+D
Sbjct: 617 RPSVAKTATDPVTLLADKISKNTLVVEHDID 647


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,803,565
Number of Sequences: 53049
Number of extensions: 415814
Number of successful extensions: 2080
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2075
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2338128087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)