Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0580
         (585 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...   158   2e-39
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...   146   8e-36
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...   120   6e-28
AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...   100   9e-22
AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine re...    33   0.11 
Z81522-7|CAB04232.1|  297|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z77133-2|CAB00864.2|  664|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z69360-4|CAC42291.2|  732|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z69360-3|CAA93286.2|  369|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z69360-2|CAA93285.2|  780|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U53148-3|AAB37077.1|  282|Caenorhabditis elegans Ground-like (gr...    27   9.8  

>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score =  158 bits (384), Expect = 2e-39
 Identities = 73/134 (54%), Positives = 93/134 (69%)
 Frame = +3

Query: 183 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 362
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 30  NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89

Query: 363 KTTAKVLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 542
             +A+  FK+L+KYRPE+                         RPNT+R G NT+T+LVE
Sbjct: 90  SQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVE 149

Query: 543 KKKAQLVVIAHDVD 584
            ++AQLV+IAHDV+
Sbjct: 150 TRRAQLVLIAHDVN 163


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score =  146 bits (355), Expect = 8e-36
 Identities = 73/134 (54%), Positives = 93/134 (69%)
 Frame = +3

Query: 183 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 362
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 30  NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89

Query: 363 KTTAKVLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 542
             +A+  FK+L+KYRPE+                         RPNT+R G NT+T+LVE
Sbjct: 90  SQSARQAFKLLDKYRPES--------------------TEVTKRPNTVRHGVNTITRLVE 129

Query: 543 KKKAQLVVIAHDVD 584
            ++AQLV+IAHDV+
Sbjct: 130 TRRAQLVLIAHDVN 143


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score =  120 bits (290), Expect = 6e-28
 Identities = 52/78 (66%), Positives = 65/78 (83%)
 Frame = +3

Query: 183 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 362
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192

Query: 363 KTTAKVLFKILEKYRPET 416
             +A+  FK+L+KYRPE+
Sbjct: 193 SHSARQAFKLLDKYRPES 210


>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score =  100 bits (239), Expect = 9e-22
 Identities = 43/60 (71%), Positives = 51/60 (85%)
 Frame = +3

Query: 183 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 362
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192


>AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 6 protein.
          Length = 330

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
 Frame = -2

Query: 458 SFSSFP--QPLFPGCFSLRPVFLQNLEKD-LSCSLVQCLGKLV 339
           SF SFP  QP+   C +++P F+ N+EK  + C ++Q  G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205


>Z81522-7|CAB04232.1|  297|Caenorhabditis elegans Hypothetical
           protein F32B4.6 protein.
          Length = 297

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = -2

Query: 509 SDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKDLSCSLVQCLGKLVDRR 330
           SD    +    +  GN+     P  L PG F  +  ++Q + KDLS  L  C+   V+ R
Sbjct: 15  SDSTSSMMLANLTFGNMRSKGTPLILVPGLFGTKENWIQ-VGKDLSQRL-GCMVFAVENR 72

Query: 329 GH 324
            H
Sbjct: 73  NH 74


>Z77133-2|CAB00864.2|  664|Caenorhabditis elegans Hypothetical
           protein K03A11.4 protein.
          Length = 664

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = +3

Query: 234 QPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKVLFKILEKYRP 410
           +PT D+S  +++  ++ +    +  Q R  +P  ++ FT  +D      + K+ E  RP
Sbjct: 188 KPTIDISSLMQFDVFVILLDSLSYSQGRRALPRTLSYFTNHMDGVIFPYVNKVGENSRP 246


>Z69360-4|CAC42291.2|  732|Caenorhabditis elegans Hypothetical
           protein F25H8.5c protein.
          Length = 732

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = +2

Query: 272 QVYPHPAPE--GCTSASSESAPSDQPIYP 352
           Q YP P P+  GCT +  +  P  QP  P
Sbjct: 161 QQYPQPQPQRGGCTYSQPQPQPQQQPQPP 189


>Z69360-3|CAA93286.2|  369|Caenorhabditis elegans Hypothetical
           protein F25H8.5b protein.
          Length = 369

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = +2

Query: 272 QVYPHPAPE--GCTSASSESAPSDQPIYP 352
           Q YP P P+  GCT +  +  P  QP  P
Sbjct: 161 QQYPQPQPQRGGCTYSQPQPQPQQQPQPP 189


>Z69360-2|CAA93285.2|  780|Caenorhabditis elegans Hypothetical
           protein F25H8.5a protein.
          Length = 780

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = +2

Query: 272 QVYPHPAPE--GCTSASSESAPSDQPIYP 352
           Q YP P P+  GCT +  +  P  QP  P
Sbjct: 161 QQYPQPQPQRGGCTYSQPQPQPQQQPQPP 189


>U53148-3|AAB37077.1|  282|Caenorhabditis elegans Ground-like (grd
           related) protein10 protein.
          Length = 282

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
 Frame = +2

Query: 260 CKMAQVYPHPAPEGCTSAS-------SESAPSDQPIYPDTGQDYS*GP 382
           C      P P P GC+ +        +++   DQPIY  T Q Y+  P
Sbjct: 35  CAPRPACPPPPPSGCSGSGVRAVARGAKTMTFDQPIYSPTPQSYAQPP 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,302,389
Number of Sequences: 27780
Number of extensions: 201555
Number of successful extensions: 643
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)