Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0580
         (585 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ...   141   3e-34
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)           141   4e-34
At5g15920.1 68418.m01862 structural maintenance of chromosomes (...    28   4.0  
At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) simi...    28   5.3  
At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) simi...    28   5.3  
At3g09210.1 68416.m01095 KOW domain-containing transcription fac...    27   9.2  
At1g25210.1 68414.m03129 UDP-3-O-acyl N-acetylglycosamine deacet...    27   9.2  
At1g25141.1 68414.m03121 UDP-3-0-acyl N-acetylglucosamine deacet...    27   9.2  
At1g25054.1 68414.m03117 UDP-3-O-acyl N-acetylglycosamine deacet...    27   9.2  
At1g24793.1 68414.m03107 UDP-3-0-acyl N-acetylglucosamine deacet...    27   9.2  

>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
           RIBOSOMAL PROTEIN L7A - Oryza sativa,
           SWISSPROT:RL7A_ORYSA
          Length = 256

 Score =  141 bits (342), Expect = 3e-34
 Identities = 70/134 (52%), Positives = 87/134 (64%)
 Frame = +3

Query: 183 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 362
           NPLFE+RPK F IG  + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLD
Sbjct: 20  NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLD 79

Query: 363 KTTAKVLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 542
           K  A  LFKIL KYRPE                          +P  ++ G N VT L+E
Sbjct: 80  KNLATSLFKILLKYRPE-DKAAKKERLLNKAQAEAEGKPAESKKPIVVKYGLNHVTYLIE 138

Query: 543 KKKAQLVVIAHDVD 584
           + KAQLVVIAHDVD
Sbjct: 139 QNKAQLVVIAHDVD 152


>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
          Length = 257

 Score =  141 bits (341), Expect = 4e-34
 Identities = 69/134 (51%), Positives = 87/134 (64%)
 Frame = +3

Query: 183 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 362
           NPLFE+RPK F IG  + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLD
Sbjct: 21  NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLD 80

Query: 363 KTTAKVLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 542
           K  A  LFK+L KYRPE                          +P  ++ G N VT L+E
Sbjct: 81  KNLATSLFKVLLKYRPE-DKAAKKERLVKKAQAEAEGKPSESKKPIVVKYGLNHVTYLIE 139

Query: 543 KKKAQLVVIAHDVD 584
           + KAQLVVIAHDVD
Sbjct: 140 QNKAQLVVIAHDVD 153


>At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC)
            family protein (MSS2) similar to SMC-related protein MSS2
            [Arabidopsis thaliana] GI:9965743; contains Pfam profiles
            PF02483: SMC family C-terminal domain, PF02463:
            RecF/RecN/SMC N terminal domain
          Length = 1053

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -2

Query: 509  SDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKDLSCSLVQCL 351
            + G+ P+  R +F   +  +S  QP  P CF L P  L  LE   +CS++  +
Sbjct: 971  NQGMDPINERKMFQQLVRAAS--QPNTPQCFLLTPKLLPELEYSEACSILNIM 1021


>At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) similar
           to 40S ribosomal protein S12 GI:4263712 from
           [Arabidopsis thaliana]
          Length = 144

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 513 GTNTVTKLVEKKKAQLVVIAHD 578
           G +   KL+EK+ AQLVV+A D
Sbjct: 47  GLHECAKLIEKRVAQLVVLAED 68


>At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) similar
           to 40S ribosomal protein S12 GI:4263712 from
           [Arabidopsis thaliana]
          Length = 144

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 513 GTNTVTKLVEKKKAQLVVIAHD 578
           G +   KL+EK+ AQLVV+A D
Sbjct: 47  GLHECAKLIEKRVAQLVVLAED 68


>At3g09210.1 68416.m01095 KOW domain-containing transcription factor
           family protein ; est match
          Length = 333

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 470 LGNLSFSSFPQPLFPGCFSLRPVFLQNLEKDL 375
           L N S S  P+P+FPGC  +R +  + +   +
Sbjct: 141 LKNGSISVKPKPVFPGCIFIRCILNKEIHDSI 172


>At1g25210.1 68414.m03129 UDP-3-O-acyl N-acetylglycosamine
           deacetylase family protein contains Pfam domain PF03331:
           UDP-3-O-acyl N-acetylglycosamine deacetylase
          Length = 955

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -2

Query: 446 FPQPLFPGC--FSLRPVFLQNLEKDLSCSLVQCLGKLVDR 333
           FPQ    GC  FS RP+   +  KD++ S   C+ + V+R
Sbjct: 442 FPQVPAIGCQWFSWRPIHESSFAKDIASSRTFCVYEEVER 481


>At1g25141.1 68414.m03121 UDP-3-0-acyl N-acetylglucosamine
           deacetylase family protein / F-box protein-related
           contains weak hit to TIGRFAM TIGR01640 : F-box protein
           interaction domain and  weak hit to  Pfam PF00646: F-box
           domain;
          Length = 925

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -2

Query: 446 FPQPLFPGC--FSLRPVFLQNLEKDLSCSLVQCLGKLVDR 333
           FPQ    GC  FS RP+   +  KD++ S   C+ + V+R
Sbjct: 442 FPQVPAIGCQWFSWRPIHESSFAKDIASSRTFCVYEEVER 481


>At1g25054.1 68414.m03117 UDP-3-O-acyl N-acetylglycosamine
           deacetylase family protein contains Pfam domain PF03331:
           UDP-3-O-acyl N-acetylglycosamine deacetylase
          Length = 949

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -2

Query: 446 FPQPLFPGC--FSLRPVFLQNLEKDLSCSLVQCLGKLVDR 333
           FPQ    GC  FS RP+   +  KD++ S   C+ + V+R
Sbjct: 436 FPQVPAIGCQWFSWRPIHESSFAKDIASSRTFCVYEEVER 475


>At1g24793.1 68414.m03107 UDP-3-0-acyl N-acetylglucosamine
           deacetylase family protein / F-box protein-related
           contains weak hit to TIGRFAM TIGR01640 : F-box protein
           interaction domain and  weak hit to  Pfam PF00646: F-box
           domain; similar to ESTs dbj AV442495.1, gb|BE522756.1,
           gb|T42945.1, gb|BE525268.1, gb|BE523201.1,
           gb|BE526298.1, gb|T42945.1, gb|AA651584.1,
           dbj|AV552951.1, dbj|AV547151.1, dbj|AV563142.1
          Length = 925

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -2

Query: 446 FPQPLFPGC--FSLRPVFLQNLEKDLSCSLVQCLGKLVDR 333
           FPQ    GC  FS RP+   +  KD++ S   C+ + V+R
Sbjct: 442 FPQVPAIGCQWFSWRPIHESSFAKDIASSRTFCVYEEVER 481


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,931,801
Number of Sequences: 28952
Number of extensions: 195837
Number of successful extensions: 588
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)