Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0579
         (575 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-...    46   6e-04
UniRef50_Q4W4D1 Cluster: Reverse transcriptase-like; n=1; Anther...    34   2.1  
UniRef50_Q1FJ33 Cluster: Cobalamin (Vitamin B12) biosynthesis Cb...    33   6.4  

>UniRef50_Q9XXW0 Cluster: Endonuclease and reverse
           transcriptase-like protein; n=9; cellular organisms|Rep:
           Endonuclease and reverse transcriptase-like protein -
           Bombyx mori (Silk moth)
          Length = 960

 Score = 46.0 bits (104), Expect = 6e-04
 Identities = 19/38 (50%), Positives = 28/38 (73%), Gaps = 2/38 (5%)
 Frame = -2

Query: 466 LQVI*SHFCRATVGSPWYVKNVDLHTD--IDPLSKYLK 359
           LQ + S FCR  VG+PW+V+NVDLH D  ++ + K++K
Sbjct: 840 LQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKHMK 877



 Score = 44.8 bits (101), Expect = 0.001
 Identities = 20/29 (68%), Positives = 24/29 (82%)
 Frame = -1

Query: 566 ALRKEVILYKTCIGTGMSYASVIFAHAAR 480
           +LR +V LYKTCI   M+YASV+FAHAAR
Sbjct: 806 SLRNKVTLYKTCIRPVMTYASVVFAHAAR 834


>UniRef50_Q4W4D1 Cluster: Reverse transcriptase-like; n=1; Antheraea
           mylitta|Rep: Reverse transcriptase-like - Antheraea
           mylitta (Tasar silkworm)
          Length = 186

 Score = 34.3 bits (75), Expect = 2.1
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 466 LQVI*SHFCRATVGSPWYVKNVDLHTDID 380
           LQV  +   R   G+PWY++ VDLH +++
Sbjct: 51  LQVFQNRVLRKVTGTPWYIRRVDLHRNLE 79



 Score = 33.5 bits (73), Expect = 3.6
 Identities = 13/29 (44%), Positives = 22/29 (75%)
 Frame = -1

Query: 566 ALRKEVILYKTCIGTGMSYASVIFAHAAR 480
           +LR ++ILYKTCI   ++Y+  +FAH ++
Sbjct: 17  SLRHKLILYKTCIRPVITYSCPVFAHMSK 45


>UniRef50_Q1FJ33 Cluster: Cobalamin (Vitamin B12) biosynthesis CbiM
           protein precursor; n=2; Clostridiales|Rep: Cobalamin
           (Vitamin B12) biosynthesis CbiM protein precursor -
           Clostridium phytofermentans ISDg
          Length = 333

 Score = 32.7 bits (71), Expect = 6.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 427 GSPWYVKNVDLHTDIDPLSKYLKRQNAHSKKRSYTTTLSSYPF 299
           G  W ++N+   TD++P SKY+   +  +K +  T  L  Y F
Sbjct: 249 GLEWSIQNLTGSTDVEPESKYIDAMDNAAKIQEKTALLPDYSF 291


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 538,492,715
Number of Sequences: 1657284
Number of extensions: 10179038
Number of successful extensions: 24018
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24016
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 39571085965
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)