Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0579
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    28   1.1  
SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr 1...    25   7.9  

>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 543 LQNLHRHGHELCKCNFRSRGPHCAYTS 463
           +  + RH H  C CN R +G  C+ +S
Sbjct: 48  IARITRHLHVKCTCNSRKKGSKCSTSS 74


>SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 415

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
 Frame = -2

Query: 490 TRPALCLYLQVI*SHFCRATVGSPWY--VKNVDLHTDI 383
           T P     L +I +H C      PWY   K  D+ TDI
Sbjct: 371 TLPDASQVLCIIPNHSCITAAAFPWYYITKGSDVITDI 408


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,294,971
Number of Sequences: 5004
Number of extensions: 44750
Number of successful extensions: 102
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)