Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0579
         (575 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0584 - 30407012-30408531,30408625-30408955                       30   1.1  
08_02_0431 + 17053928-17054189,17054296-17054564,17054661-170548...    28   6.1  
05_04_0399 - 20955319-20955838,20955939-20956201                       28   6.1  
11_06_0471 + 23982629-23982875,23982965-23983123,23983199-239833...    27   8.1  
07_01_0794 - 6179424-6179714,6179797-6179844,6180189-6180248,618...    27   8.1  
02_01_0228 + 1507314-1507566,1507645-1507913,1508010-1508213,150...    27   8.1  

>01_06_0584 - 30407012-30408531,30408625-30408955
          Length = 616

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 447 WD*MTWRYKHNAGRVSENYTCIAHARAYAS 536
           W+   W Y H+ GRV  N   I++A A AS
Sbjct: 538 WETGDWEYNHSFGRVLANNNAISNAAAAAS 567


>08_02_0431 +
           17053928-17054189,17054296-17054564,17054661-17054864,
           17054974-17055066,17055160-17055255,17055339-17055683,
           17055935-17056018,17056106-17056171,17056268-17056333,
           17056436-17056501,17056635-17056700,17056798-17056863,
           17056981-17057028,17057107-17057169,17057255-17057320,
           17057483-17057542,17057888-17057935,17058019-17058255,
           17058346-17058366
          Length = 741

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +1

Query: 316 GSLCSSAFSNERSDASDTYLRDLCRCEDRHSSRTTVIRRL 435
           G   SSA+ N + D  D Y+ +  +    H ++  + R+L
Sbjct: 509 GKSISSAYKNNKPDNQDNYMLNAHKVTSTHKNKENLTRKL 548


>05_04_0399 - 20955319-20955838,20955939-20956201
          Length = 260

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -3

Query: 522 GHELCKCNFRSRGPHCAYTSRSFNPISAGQ 433
           G E C C   S+GPH     R F P+  GQ
Sbjct: 232 GGEACSCQADSKGPH---EFRYFRPLEQGQ 258


>11_06_0471 +
           23982629-23982875,23982965-23983123,23983199-23983357,
           23983433-23983496,23983813-23983900,23985497-23985517,
           23985950-23986020,23986299-23986502,23986680-23986686
          Length = 339

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 130 KERPLKALYLYIPCMTNECSLQNSMQYRERK 38
           K +P + +Y  +     E  LQN+  YR+RK
Sbjct: 97  KRKPDREVYASLSAEEKEAKLQNNRDYRQRK 127


>07_01_0794 -
           6179424-6179714,6179797-6179844,6180189-6180248,
           6180411-6180476,6180562-6180624,6180703-6180750,
           6180868-6180933,6181031-6181096,6181230-6181295,
           6181510-6181575,6181663-6181746,6181839-6181907,
           6181998-6182342,6182426-6182521,6182615-6182707,
           6182817-6183020,6183117-6183385,6183492-6183753
          Length = 753

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +1

Query: 316 GSLCSSAFSNERSDASDTYLRDLCRCEDRHSSRTTVIRRL 435
           G   SSA+ N + D  D Y+ +  +    H ++  + R+L
Sbjct: 510 GKSISSAYKNNKPDNQDNYMVNAHKVTSTHKNKENLTRKL 549


>02_01_0228 +
           1507314-1507566,1507645-1507913,1508010-1508213,
           1508323-1508415,1508509-1508604,1508688-1509032,
           1509123-1509191,1509284-1509367,1509455-1509520,
           1509735-1509800,1509934-1509999,1510097-1510162,
           1510280-1510327,1510406-1510468,1510554-1510619,
           1510782-1510841,1511185-1511232,1511315-1511605
          Length = 750

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +1

Query: 316 GSLCSSAFSNERSDASDTYLRDLCRCEDRHSSRTTVIRRL 435
           G   SSA+ N + D  D Y+ +  +    H ++  + R+L
Sbjct: 507 GKSISSAYKNNKPDNQDNYMVNAHKVTSTHKNKENLTRKL 546


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,269,966
Number of Sequences: 37544
Number of extensions: 273019
Number of successful extensions: 626
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)