Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0579
         (575 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)             32   0.39 
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.51 
SB_34906| Best HMM Match : Cadherin (HMM E-Value=0)                    31   0.67 
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_26962| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_44263| Best HMM Match : Pea-VEAacid (HMM E-Value=3.4)               27   8.3  
SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_24027| Best HMM Match : FAD_binding_7 (HMM E-Value=0)               27   8.3  
SB_19359| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  

>SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)
          Length = 1425

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -1

Query: 362 EASERSFEKAELHNDPFIVPFLSQFFQVEPREATSR*IRKSTTGGQST 219
           E  +R  EK+EL N PF +  +  F++     + SR I K+T+G   T
Sbjct: 671 EEKDRKMEKSELSNRPFAL--VDTFYRSRAASSPSRPITKATSGAGDT 716


>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6753

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 534  LHRHGHELCKCNFRSRGPHCAYTSRS 457
            ++ +G   C CN    GPHC YT +S
Sbjct: 3633 INTYGSHACVCNGDKYGPHCNYTCKS 3658


>SB_34906| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 3922

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 522  GHELCKCNFRSRGPHCAYTSRSFNPIS 442
            G  +C+C    RGPHC  T+R+F   S
Sbjct: 2842 GWRVCQCPRGYRGPHCEQTTRTFRGTS 2868


>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2680

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = +1

Query: 292 CERKGTMKGSLCSSAFSNERSDASDTYLRDLCR-CED-RHSSRTTVIRRLPCRN-GIK*P 462
           C+  GT+ GS+C +     R  A  T LR  C  CED  HS  ++  +   C   G K P
Sbjct: 614 CDPFGTLPGSVCDAGSGQCRCKAGSTGLR--CHLCEDGYHSLDSSGCKTCNCSTIGAK-P 670

Query: 463 GGIST 477
           G ++T
Sbjct: 671 GLVNT 675


>SB_26962| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 289 NCERKGTMKGSLCSSAFSNERSDASDTYLRDLCR 390
           +C    TM+G L S  F N R D +D+++ D CR
Sbjct: 59  DCLGGKTMRGLLMS--FGNTRRDGTDSWVSDQCR 90


>SB_44263| Best HMM Match : Pea-VEAacid (HMM E-Value=3.4)
          Length = 344

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -2

Query: 421 PWYVKNVDLHTDIDPLSKYLKRQNAHSKKRSYTTTLSSYPFF 296
           PW   ++D+    D L  + K     +K  +Y    S YPFF
Sbjct: 278 PWEAGDIDMCLFGDSLEPFAKICEEFAKTNNYQFYKSGYPFF 319


>SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3464

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 415 YVKNVDLHTDIDPLSKYLKRQNAHSKKR 332
           Y K    H D+D + KY+++Q A  KK+
Sbjct: 623 YPKEKVRHYDVDQVKKYMEKQLAERKKK 650


>SB_24027| Best HMM Match : FAD_binding_7 (HMM E-Value=0)
          Length = 1074

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -1

Query: 326 HNDPFIVPFLSQFFQVEPREATSR*IRKSTTGGQ 225
           H D + VP LS+F   E +EAT+   +K  TGG+
Sbjct: 877 HADKYGVPLLSEFGMKELKEATA---KKYWTGGE 907


>SB_19359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 84

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -2

Query: 421 PWYVKNVDLHTDIDPLSKYLKRQNAHSKKRSYTTTLSSYPFF 296
           PW   ++D+    D L  + K     +K  +Y    S YPFF
Sbjct: 18  PWEAGDIDMCLFGDSLEPFAKICEEFAKTNNYQFYKSGYPFF 59


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,017,703
Number of Sequences: 59808
Number of extensions: 338382
Number of successful extensions: 799
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)