Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0579
         (575 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016422-1|AAG24175.1|  335|Caenorhabditis elegans Seven tm rece...    31   0.78 
Z81473-8|CAB03899.2|  418|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z81473-4|CAB03891.1|  463|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AL031636-1|CAA21046.2|  418|Caenorhabditis elegans Hypothetical ...    29   2.4  
U49947-1|AAA93420.2|  232|Caenorhabditis elegans Hypothetical pr...    28   5.5  

>AF016422-1|AAG24175.1|  335|Caenorhabditis elegans Seven tm
           receptor protein 238 protein.
          Length = 335

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 51  YCIEFCK-LHSFVIQGIYKYRALRGRSLCRTISKRKTL 161
           +C+ F + L  F I  +Y+Y A+ G S  +T S RKTL
Sbjct: 92  FCVLFGESLAVFSIHFVYRYLAITGHSFLKTKSLRKTL 129


>Z81473-8|CAB03899.2|  418|Caenorhabditis elegans Hypothetical
           protein Y47H9A.1 protein.
          Length = 418

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 421 PWYVKNVDLHTDIDPLSKYLKRQNAHSKKRSY 326
           P+ VKNV+ H+D +P   YL+++  + +   Y
Sbjct: 107 PFIVKNVERHSDEEPYDVYLQKKKRNEEGMIY 138


>Z81473-4|CAB03891.1|  463|Caenorhabditis elegans Hypothetical
           protein C17D12.3 protein.
          Length = 463

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 421 PWYVKNVDLHTDIDPLSKYLKRQNAHSKKRSY 326
           P+ VKNV+ H+D +P   YL+++  + +   Y
Sbjct: 107 PFIVKNVERHSDEEPYDVYLQKKKRNEEGMIY 138


>AL031636-1|CAA21046.2|  418|Caenorhabditis elegans Hypothetical
           protein Y47H9A.1 protein.
          Length = 418

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 421 PWYVKNVDLHTDIDPLSKYLKRQNAHSKKRSY 326
           P+ VKNV+ H+D +P   YL+++  + +   Y
Sbjct: 107 PFIVKNVERHSDEEPYDVYLQKKKRNEEGMIY 138


>U49947-1|AAA93420.2|  232|Caenorhabditis elegans Hypothetical
           protein C30G4.2 protein.
          Length = 232

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 362 EASERSFEKAELHNDPFIVPFLSQFF 285
           +  E  FE A+L+  PF++ F +QFF
Sbjct: 189 QLKEDLFEVAKLYEFPFVINFYNQFF 214


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,670,843
Number of Sequences: 27780
Number of extensions: 253142
Number of successful extensions: 704
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)