Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0577
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    29   0.68 
SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    26   3.6  
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    26   3.6  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    26   4.8  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    26   4.8  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   6.3  
SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy...    25   6.3  

>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = +3

Query: 273 EGELSQAGIFFDDQFDEREI*GYFRRSAIHSRRDHGQGVEQHGCRRRQARGETGRARL 446
           +  L +  + F ++  + E+  YF+     S+  H  G       RRQ+ G T   RL
Sbjct: 17  DSSLDEDSLSFLEELQDPEL--YFKNDTFSSKSSHSDGTVTGDTLRRQSSGATALERL 72


>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 378 GQGVEQHGCRRRQARGETGRARLHFPSVHPPVHPADRIRGQRPGQHVV 521
           G+ +E+ GC R    G+  R  +  P+   PV PAD+      G  VV
Sbjct: 44  GKRLERLGCVRNLRIGQKFRGVVITPNGKVPVSPADKEYFDNGGASVV 91


>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = +1

Query: 250 RNSYFRPWRASLARQESSSTINLTKEKFEVILDVQQFTPDEITVKASNNTVVVEGKHEEK 429
           R+SYF+   + L   E    +    ++FE IL       + +  K  NN ++  GK  + 
Sbjct: 188 RSSYFKSKFSKLGPSEHEIEVKHFAKEFESILRYLYLDTNAVFTKQYNNALLSIGKKFQL 247

Query: 430 QD 435
            D
Sbjct: 248 ND 249


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 261 LQTLEGELSQAGIFFDDQFDERE 329
           ++TLE ELSQAG+   +Q  + +
Sbjct: 442 VRTLENELSQAGVNLQEQIHQND 464


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/53 (24%), Positives = 24/53 (45%)
 Frame = +3

Query: 318 DEREI*GYFRRSAIHSRRDHGQGVEQHGCRRRQARGETGRARLHFPSVHPPVH 476
           D+ E+  +      + ++ + Q  EQH       R  +  ++ +  S HPPVH
Sbjct: 234 DDAELYRFRSSRQTYPQQPNSQPCEQHPAHANLRRSVSLGSKDYLKSSHPPVH 286


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = +1

Query: 385 ASNNTVVVEGKH-EEKQDEHGFISRQ-FTRRYILPTGYEVNDLVSTLSSDGVLTVTAPKR 558
           ++++T V E +H +E+Q E   +    FT+  +     +V++ +  ++S  + TV  P  
Sbjct: 72  SASSTPVEEAQHAQEEQQEQTILQEPGFTQTIVEKDADQVDEPLEPIASSALGTVEPPTD 131

Query: 559 PPPNA 573
             P+A
Sbjct: 132 NKPSA 136


>SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 276

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +3

Query: 372 DHGQGVEQHGCRRRQARGETGRARLHFPSVHPPVHPADRIRGQR 503
           D  QG E+      Q+   TGR +L    +H P  P  RI   R
Sbjct: 80  DSLQGFERTWKAVEQSLRRTGRPKLDVVLIHSPKWPVRRIESWR 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,246,228
Number of Sequences: 5004
Number of extensions: 43149
Number of successful extensions: 166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)