Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0577
(594 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26) 67 9e-12
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 63 1e-10
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 59 3e-09
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 5e-09
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 58 5e-09
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 58 5e-09
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29) 57 1e-08
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26) 56 2e-08
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05) 49 3e-06
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05) 32 0.30
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5) 28 6.5
SB_6248| Best HMM Match : KH_1 (HMM E-Value=1.6e-41) 27 8.6
>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
Length = 185
Score = 67.3 bits (157), Expect = 9e-12
Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Frame = +1
Query: 325 EKFEVI-LDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFISRQFTRRYILPTGYEVN 501
+KF++ LDV++F P+EIT K N + V G + +E GF S++F R Y LP G + +
Sbjct: 4 DKFQIATLDVREFKPEEITCKVENGKIKVSGLQRHESEE-GFDSKEFRRCYNLPEGVDES 62
Query: 502 DLVSTLSSDGVLTVTAPKRPPPNAGERIVP 591
+ + ++ DG+L V A K+ PP E P
Sbjct: 63 SISTRIAEDGMLHVEALKKSPPATTENKAP 92
Score = 65.3 bits (152), Expect = 4e-11
Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Frame = +1
Query: 286 ARQESSSTINLTKEKFEVILDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFIS-RQF 462
A E+ + KF + LDV F P+E+ VK + + V + E +EHGF + RQF
Sbjct: 85 ATTENKAPATKDDTKFTLALDVSDFKPEEVDVKVYGHELSVRARQE--CEEHGFFTARQF 142
Query: 463 TRRYILPTGYEVNDLVSTLSSDGVLTVTAPKRP 561
R ++LP +++ LV L DGVL + A KRP
Sbjct: 143 NRHFVLPREVDMDTLVPRLGKDGVLYIEADKRP 175
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 63.3 bits (147), Expect = 1e-10
Identities = 29/81 (35%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Frame = +1
Query: 325 EKFEVI-LDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFISRQFTRRYILPTGYEVN 501
+K E+ LDV+ + P+EI++K + + ++GKH+ + EHG+ + +F R Y LP G +V+
Sbjct: 38 DKVEIATLDVKNYRPEEISLKVEHGRIKIDGKHKS-EGEHGYETSEFHRSYNLPDGVDVS 96
Query: 502 DLVSTLSSDGVLTVTAPKRPP 564
+ S ++ DG+L + A K P
Sbjct: 97 TVSSRITGDGLLHIEALKAEP 117
Score = 30.7 bits (66), Expect(2) = 0.093
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 466 RRYILPTGYEVNDLVSTLSSDGVLTVTAPKRPPPNAGERIVPI 594
R ++LP +++ LVS L DG L + A + P ER V I
Sbjct: 161 RHFVLPKDVDMDSLVSRLGKDGKLYIEAKRILHPTPHERQVNI 203
Score = 22.2 bits (45), Expect(2) = 0.093
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1
Query: 325 EKFEVILDVQQFTPD 369
++F V LDV F+PD
Sbjct: 141 KRFTVTLDVSSFSPD 155
>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
Length = 424
Score = 58.8 bits (136), Expect = 3e-09
Identities = 33/101 (32%), Positives = 57/101 (56%), Gaps = 2/101 (1%)
Frame = +1
Query: 283 LARQESSSTINLTKEKFEVI-LDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFISRQ 459
L + S + L ++ E+ LDV+++ P+EI+ K N V V+G+H + GF ++
Sbjct: 225 LDEEVSCRLVYLQLDELEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKE 283
Query: 460 FTRRYILPTGYEVNDLVSTLSSDGVLTVTAPKR-PPPNAGE 579
F R + LP G E +++ + +S+ G L + A K P P+ GE
Sbjct: 284 FRRTFTLPEGVEASNVKTRISNHGQLHIEAMKALPGPDGGE 324
Score = 58.0 bits (134), Expect = 5e-09
Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Frame = +1
Query: 322 KEKFEVI-LDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFISRQFTRRYILPTGYEV 498
+ K E+ LDV+++ P+EI+ K N V V+G+H + GF ++F R + LP G E
Sbjct: 4 ENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEA 62
Query: 499 NDLVSTLSSDGVLTVTAPKR-PPPNAGE 579
+++ + +S+ G L + A K P P+ GE
Sbjct: 63 SNVKTRISNHGQLHIEAMKALPGPDGGE 90
Score = 54.8 bits (126), Expect = 5e-08
Identities = 26/81 (32%), Positives = 44/81 (54%)
Frame = +1
Query: 325 EKFEVILDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFISRQFTRRYILPTGYEVND 504
+KF + +DV F PD I V+ N ++V HE + + H + + F R+++LP +++
Sbjct: 97 DKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDS 155
Query: 505 LVSTLSSDGVLTVTAPKRPPP 567
L + L +G L A KR P
Sbjct: 156 LTTRLDKEGKLHFEAKKRNAP 176
Score = 54.8 bits (126), Expect = 5e-08
Identities = 26/81 (32%), Positives = 44/81 (54%)
Frame = +1
Query: 325 EKFEVILDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFISRQFTRRYILPTGYEVND 504
+KF + +DV F PD I V+ N ++V HE + + H + + F R+++LP +++
Sbjct: 331 DKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDS 389
Query: 505 LVSTLSSDGVLTVTAPKRPPP 567
L + L +G L A KR P
Sbjct: 390 LTTRLDKEGKLHFEAKKRNAP 410
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 58.0 bits (134), Expect = 5e-09
Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Frame = +1
Query: 322 KEKFEVI-LDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFISRQFTRRYILPTGYEV 498
+ K E+ LDV+++ P+EI+ K N V V+G+H + GF ++F R + LP G E
Sbjct: 4 ENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEA 62
Query: 499 NDLVSTLSSDGVLTVTAPKR-PPPNAGE 579
+++ + +S+ G L + A K P P+ GE
Sbjct: 63 SNVKTRISNHGQLHIEAMKALPGPDGGE 90
Score = 54.8 bits (126), Expect = 5e-08
Identities = 26/81 (32%), Positives = 44/81 (54%)
Frame = +1
Query: 325 EKFEVILDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFISRQFTRRYILPTGYEVND 504
+KF + +DV F PD I V+ N ++V HE + + H + + F R+++LP +++
Sbjct: 97 DKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDS 155
Query: 505 LVSTLSSDGVLTVTAPKRPPP 567
L + L +G L A KR P
Sbjct: 156 LTTRLDKEGKLHFEAKKRNAP 176
>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 58.0 bits (134), Expect = 5e-09
Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Frame = +1
Query: 322 KEKFEVI-LDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFISRQFTRRYILPTGYEV 498
+ K E+ LDV+++ P+EI+ K N V V+G+H + GF ++F R + LP G E
Sbjct: 4 ENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFALPEGVEA 62
Query: 499 NDLVSTLSSDGVLTVTAPKR-PPPNAGE 579
+++ + +S+ G L + A K P P+ GE
Sbjct: 63 SNVKTRISNHGQLHIEAMKALPGPDGGE 90
Score = 54.8 bits (126), Expect = 5e-08
Identities = 26/81 (32%), Positives = 44/81 (54%)
Frame = +1
Query: 325 EKFEVILDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFISRQFTRRYILPTGYEVND 504
+KF + +DV F PD I V+ N ++V HE + + H + + F R+++LP +++
Sbjct: 97 DKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDS 155
Query: 505 LVSTLSSDGVLTVTAPKRPPP 567
L + L +G L A KR P
Sbjct: 156 LTTRLDKEGKLHFEAKKRNAP 176
>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 58.0 bits (134), Expect = 5e-09
Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Frame = +1
Query: 322 KEKFEVI-LDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFISRQFTRRYILPTGYEV 498
+ K E+ LDV+++ P+EI+ K N V V+G+H + GF ++F R + LP G E
Sbjct: 4 ENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFALPEGVEA 62
Query: 499 NDLVSTLSSDGVLTVTAPKR-PPPNAGE 579
+++ + +S+ G L + A K P P+ GE
Sbjct: 63 SNVKTRISNHGQLHIEAMKALPGPDGGE 90
Score = 54.8 bits (126), Expect = 5e-08
Identities = 26/81 (32%), Positives = 44/81 (54%)
Frame = +1
Query: 325 EKFEVILDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFISRQFTRRYILPTGYEVND 504
+KF + +DV F PD I V+ N ++V HE + + H + + F R+++LP +++
Sbjct: 97 DKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDS 155
Query: 505 LVSTLSSDGVLTVTAPKRPPP 567
L + L +G L A KR P
Sbjct: 156 LTTRLDKEGKLHFEAKKRNAP 176
>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
Length = 189
Score = 56.8 bits (131), Expect = 1e-08
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Frame = +1
Query: 343 LDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFISRQFTRRYILPTGYEVNDLVSTLS 522
LDV+++ P+EI+ K N V V+G+H + E GF ++F R + LP G + ++ S +S
Sbjct: 12 LDVKEYRPEEISFKVENGVVKVQGRH-VNEGEFGFELKEFRRTFTLPEGIDPENVTSRIS 70
Query: 523 SDGVLTVTAPKR-PPPNA 573
+ G L + A K P P A
Sbjct: 71 NHGHLHIEARKALPKPEA 88
Score = 51.2 bits (117), Expect = 6e-07
Identities = 24/82 (29%), Positives = 44/82 (53%)
Frame = +1
Query: 322 KEKFEVILDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFISRQFTRRYILPTGYEVN 501
++KF + +DV F P+ I V+ N ++V HE + + H + + F R+++LP +++
Sbjct: 95 EDKFSMAIDVAGFPPESIKVQVLGNELLVNANHEVEHEGH-YHAMHFNRQFVLPREVDMD 153
Query: 502 DLVSTLSSDGVLTVTAPKRPPP 567
L + L +G L A K P
Sbjct: 154 SLTTRLDKEGKLHFEAKKSVAP 175
>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
Length = 695
Score = 56.0 bits (129), Expect = 2e-08
Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Frame = +1
Query: 322 KEKFEVI-LDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFISRQFTRRYILPTGYEV 498
+ K E+ LDV+++ P+EI+ K N V V+G+H + GF ++F R + LP G E
Sbjct: 5 ENKLEIAKLDVREYRPEEISFKVENGVVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEA 63
Query: 499 NDLVSTLSSDGVLTVTAPKRPPPNAGER 582
+++ + +S+ G L + A K P G +
Sbjct: 64 SNVKTRISNHGQLHIEAMKALPEPDGAK 91
Score = 54.0 bits (124), Expect = 9e-08
Identities = 26/81 (32%), Positives = 45/81 (55%)
Frame = +1
Query: 325 EKFEVILDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFISRQFTRRYILPTGYEVND 504
+KF + +DV+ F P+ I V+ N ++V HE + + H + + F R++ILP +++
Sbjct: 97 DKFSMAMDVKGFPPEAIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFILPREVDMDS 155
Query: 505 LVSTLSSDGVLTVTAPKRPPP 567
L + L +G L A KR P
Sbjct: 156 LTTRLDKEGKLHFEAKKRNAP 176
>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
Length = 259
Score = 48.8 bits (111), Expect = 3e-06
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +1
Query: 274 RASLARQESSSTINLTKEKFEVILDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFI- 450
+A A +E+ S KF + LDV F P+E+ VK + + V + E +EHGF
Sbjct: 9 KAPPATKENQSAATKDDTKFTLALDVSDFKPEEVDVKVYGHELSVRARQE--CEEHGFFT 66
Query: 451 SRQFTRRYILP 483
+RQF R ++LP
Sbjct: 67 ARQFNRHFVLP 77
>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
Length = 3397
Score = 32.3 bits (70), Expect = 0.30
Identities = 21/66 (31%), Positives = 29/66 (43%)
Frame = +1
Query: 343 LDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFISRQFTRRYILPTGYEVNDLVSTLS 522
L Q TP + + E K+EE DEHG I R+ T+ E + T++
Sbjct: 1165 LSTFQITPISQIPSSLTEKLQPETKYEEYVDEHGQIIRRTTKVKHTAVKQERTTVTKTVT 1224
Query: 523 SDGVLT 540
DGV T
Sbjct: 1225 RDGVTT 1230
>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 28.7 bits (61), Expect = 3.7
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Frame = +3
Query: 351 SAIHSRRDHGQGVEQHGCRRRQARGETGRARLHFPSVHPPVHPADRIRGQRP-GQHVVFR 527
S H RR + + RRR++R R R PS H H R R + P +H R
Sbjct: 215 SPAHHRRSRSRSRSRSPRRRRRSRSPRRRRRSRSPSPHHRSH-RSRSRSRSPRRRHSRSR 273
Query: 528 RRAHR 542
HR
Sbjct: 274 SPTHR 278
>SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = +1
Query: 280 SLARQESSSTINLTKEKFEVILDVQQFTPDEITVKASNNTV 402
S A+Q +S +LT K EV + V Q TP E K SNN +
Sbjct: 396 SNAQQATSKEQHLTS-KGEVQVPVGQITPSEQASKTSNNAL 435
>SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5)
Length = 436
Score = 27.9 bits (59), Expect = 6.5
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 415 KHEEKQDEHGFISRQFTRRYIL 480
KHEE++D HG++ + T ++ L
Sbjct: 72 KHEEREDRHGYLKDKVTLQHAL 93
>SB_6248| Best HMM Match : KH_1 (HMM E-Value=1.6e-41)
Length = 487
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 424 EKQDEHGFISRQFTRRYILPTGYE-VNDLVSTLSSDGVLTVTAPKRPPPNAGERIVP 591
+ +D G I + T L T Y V ++ T S++ VLT+TAP++ + +VP
Sbjct: 60 QSKDAGGIIGKGGTNIRRLRTEYNAVVNVPDTNSNERVLTITAPRQSALDILAEVVP 116
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,598,631
Number of Sequences: 59808
Number of extensions: 353869
Number of successful extensions: 1215
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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