Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0577
         (594 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   3.0  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   5.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.9  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 269 GLKYEFLKSEVEGNELMEDN 210
           G+K   + S+VEGN + E+N
Sbjct: 214 GVKNNHVSSKVEGNGVHEEN 233


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 224 LMEDNRSSFFRPMPKCWSSSL 162
           L   N ++FFR M + W ++L
Sbjct: 338 LTRQNPAAFFRGMMQAWMTAL 358


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 496 VNDLVSTLSSDGVLTVTAP 552
           VN+ V   S + VLTVTAP
Sbjct: 289 VNNSVGGESVETVLTVTAP 307


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,828
Number of Sequences: 438
Number of extensions: 3237
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)