Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0576
         (697 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   2.4  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   5.5  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   5.5  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    22   5.5  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    21   7.3  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   9.6  
AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    21   9.6  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    21   9.6  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 327 YQKSLGKFR*IAKRNKFL-GLLEEPGVNTHGCPSRE 223
           YQ+ L  +R +    KF  G  E+P V T G PSR+
Sbjct: 501 YQQ-LSNYRNVDNSAKFKDGFQEQPNVVTVGNPSRK 535


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +3

Query: 30  NENSNRYYEESDSFNENSNRLVQL 101
           NE+  + +   +++NE  N+L  L
Sbjct: 338 NEDETKNHYSKNTYNEQGNKLADL 361


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +3

Query: 30  NENSNRYYEESDSFNENSNRLVQL 101
           NE+  + +   +++NE  N+L  L
Sbjct: 230 NEDETKNHYSKNTYNEQGNKLADL 253


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/35 (25%), Positives = 14/35 (40%)
 Frame = -2

Query: 258 PGVNTHGCPSREYYKIMYAFSKGQIYHQTRKELAY 154
           PG+  HG P    +  M  +  G    Q R+   +
Sbjct: 42  PGLGLHGLPVDSLHSSMAGYPAGNQRKQRRERTTF 76


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -2

Query: 186 IYHQTRKELAYIMRSWNFRLVYGDCL 109
           + H  +K+  YI     + +V+G CL
Sbjct: 179 VEHFFKKQFHYIFTYMPYNIVFGLCL 204


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 221 YSREGQPCVFTPGSSNSPRN 280
           Y  EG+     PG+S++P N
Sbjct: 80  YECEGRSAGSIPGASSTPEN 99


>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 55  RNLIVSMRTVTDWFSYCWETIAIY 126
           +N+IVS+R +        ET+A++
Sbjct: 212 KNIIVSLRQIGSLSQLLSETVALF 235


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 55  RNLIVSMRTVTDWFSYCWETIAIY 126
           +N+IVS+R +        ET+A++
Sbjct: 212 KNIIVSLRQIGSLSQLLSETVALF 235


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,700
Number of Sequences: 336
Number of extensions: 3434
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)