Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0576
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1695 - 28775525-28776098,28776586-28776693,28777129-28777448     29   2.7  
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162...    29   3.5  
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315...    29   3.5  
07_03_1180 - 24601631-24602142,24602518-24602581,24602811-246028...    29   4.7  
02_05_0083 + 25684816-25685383,25685474-25685499,25686325-256867...    28   6.2  
02_05_0491 + 29470575-29471351,29471574-29471806,29472697-294728...    28   8.1  

>07_03_1695 - 28775525-28776098,28776586-28776693,28777129-28777448
          Length = 333

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +3

Query: 318 SFDNGITGAISS--SSEKLAIAGKLPLKPSCYSEISHPTGTLTGSSRTDY 461
           SF N  +  +SS  +SE  A++  LPL     S ++ P+ ++ GS+  DY
Sbjct: 240 SFANCHSPVLSSECASEAAALSSSLPLSAVVGSAVTTPSTSIVGSAPADY 289


>06_03_0510 -
           21615724-21615909,21615992-21616075,21616164-21616217,
           21616324-21616371,21616529-21616611,21616963-21617113,
           21617648-21617785,21617966-21618094,21618391-21618596,
           21618734-21618845,21619145-21619204,21619331-21619429,
           21619520-21619575,21620230-21620313,21621407-21621500
          Length = 527

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 22/68 (32%), Positives = 36/68 (52%)
 Frame = +3

Query: 381 KLPLKPSCYSEISHPTGTLTGSSRTDYPREHKWLI*VQQLHSRSRYKRPYRVPSLTHYLK 560
           ++P+      +I+HPT  LTG     Y  E +  I  +QLH+R  Y     +PSL+  +K
Sbjct: 367 QIPILTMPNDDITHPTPDLTG-----YITEGQIYI-DRQLHNRQIYPPINVLPSLSRLMK 420

Query: 561 NAQKKRLT 584
           +A  + +T
Sbjct: 421 SAIGEGMT 428


>01_06_0458 +
           29531069-29531126,29531247-29531302,29531407-29531505,
           29531989-29532048,29532285-29532396,29532459-29532694,
           29533092-29533220,29533325-29533462,29534043-29534193,
           29534394-29534476,29534658-29534705,29534828-29534881,
           29534971-29535054,29535152-29535337
          Length = 497

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 22/68 (32%), Positives = 36/68 (52%)
 Frame = +3

Query: 381 KLPLKPSCYSEISHPTGTLTGSSRTDYPREHKWLI*VQQLHSRSRYKRPYRVPSLTHYLK 560
           ++P+      +I+HPT  LTG     Y  E +  I  +QLH+R  Y     +PSL+  +K
Sbjct: 337 QIPILTMPNDDITHPTPDLTG-----YITEGQIYI-DRQLHNRQIYPPINVLPSLSRLMK 390

Query: 561 NAQKKRLT 584
           +A  + +T
Sbjct: 391 SAIGEGMT 398


>07_03_1180 -
           24601631-24602142,24602518-24602581,24602811-24602876,
           24602949-24603070,24603170-24603344,24603466-24603701,
           24603781-24604129,24605009-24605146,24605242-24605289
          Length = 569

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +3

Query: 12  GTRASFNENSNRYYEESDSFNENSNRLVQ 98
           G    +++N N Y++  D +++N NR  Q
Sbjct: 477 GNGGGYHQNGNGYHQNGDGYHQNGNRYNQ 505



 Score = 28.3 bits (60), Expect = 6.2
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 27  FNENSNRYYEESDSFNENSN 86
           +N+N NRY++  D + +N N
Sbjct: 503 YNQNGNRYHQNGDEYYQNGN 522


>02_05_0083 +
           25684816-25685383,25685474-25685499,25686325-25686718,
           25687726-25687814,25687924-25687980,25688341-25688408,
           25688511-25688617,25688698-25688768,25688844-25688912
          Length = 482

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/27 (40%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = +3

Query: 45  RYYEES-DSFNENSNRLVQLLLGDNRH 122
           +YYE++ D+F E + + V+ LLG+ +H
Sbjct: 355 QYYEKAVDAFREGNQKEVEYLLGEGKH 381


>02_05_0491 +
           29470575-29471351,29471574-29471806,29472697-29472856,
           29473149-29473394,29473492-29473628,29473874-29474207,
           29474283-29474444,29474717-29474791,29474866-29474966,
           29475042-29475111,29475210-29475266,29475357-29475418,
           29475505-29475577,29475663-29475884
          Length = 902

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -3

Query: 596 R*TACQS--LLLCILQVVCE*WDSIGPLVPAARV*LLDSNEPLVFPWI 459
           R TAC++  L L  LQ + + WDS  P +P  RV  + S    V  W+
Sbjct: 749 RPTACENARLYLAELQKIVKNWDSNKPWLPKKRVDEVVSEAEKVKTWL 796


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,483,648
Number of Sequences: 37544
Number of extensions: 352540
Number of successful extensions: 691
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)