Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0576
         (697 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51382| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_4078| Best HMM Match : Sua5_yciO_yrdC (HMM E-Value=3e-32)           29   3.6  
SB_30225| Best HMM Match : Peptidase_S8 (HMM E-Value=0.0034)           29   4.8  
SB_53461| Best HMM Match : Amelogenin (HMM E-Value=0.099)              28   6.3  
SB_52197| Best HMM Match : TPR_2 (HMM E-Value=6.6e-10)                 28   8.3  
SB_46013| Best HMM Match : DUF1129 (HMM E-Value=0.23)                  28   8.3  
SB_26286| Best HMM Match : DUF963 (HMM E-Value=0.82)                   28   8.3  

>SB_51382| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 216

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +3

Query: 24  SFNENSNRYYEESDSFNENSN 86
           +FN+NSN + + S +FN+NSN
Sbjct: 62  TFNDNSNTFNDNSITFNDNSN 82


>SB_4078| Best HMM Match : Sua5_yciO_yrdC (HMM E-Value=3e-32)
          Length = 303

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 485 LSPTITLAQQVQAAL*SPITHTLPEECTEEE 577
           L PT TLA Q  AA+ SPI+  L  +  +EE
Sbjct: 87  LEPTETLATQATAAMNSPISRRLIPDTQQEE 117


>SB_30225| Best HMM Match : Peptidase_S8 (HMM E-Value=0.0034)
          Length = 605

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 417 SHPTGTL-TGSSRTDYPREHKWLI*VQQLHSRSRYKRPY 530
           SHP+ +  +   RTD  R+H+ +  V+Q H + R KR +
Sbjct: 84  SHPSRSRRSAEDRTDQLRQHRHVTWVEQQHEKVREKRGF 122


>SB_53461| Best HMM Match : Amelogenin (HMM E-Value=0.099)
          Length = 2489

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -3

Query: 347  YCSCDAIIKRVWASLDKLPNETSFSGYWKSLV 252
            YC C       W   D+  N +S   YWK L+
Sbjct: 2252 YCKCLLWSTEFWGVEDRAVNVSSLKAYWKRLL 2283


>SB_52197| Best HMM Match : TPR_2 (HMM E-Value=6.6e-10)
          Length = 536

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -2

Query: 225 EYYKIMYAFSKGQIYHQTRKELAYIMRSWNFRLVYGDCLPAITE 94
           EY++  Y  +KG+I+     E  + M   N R VY      +TE
Sbjct: 210 EYFESFYNLTKGRIWQMDSGENLHSMSCENLRRVYTAISDLVTE 253


>SB_46013| Best HMM Match : DUF1129 (HMM E-Value=0.23)
          Length = 553

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 24  SFNENSNRYYEESDSFNENSNRLVQLLLGDN-RHIRVGSSKTS 149
           S N+N N   +  +S N+N N +    + DN   I VGS   S
Sbjct: 490 SINDNDNSINDNDNSINDNDNSINDSSINDNDSSIYVGSINDS 532


>SB_26286| Best HMM Match : DUF963 (HMM E-Value=0.82)
          Length = 167

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 23/86 (26%), Positives = 38/86 (44%)
 Frame = +3

Query: 3   QEFGTRASFNENSNRYYEESDSFNENSNRLVQLLLGDNRHIRVGSSKTS*YMLILSLFDD 182
           QEF  +    E SNR Y+      E SNR+ +      +H+   S++   +   L+ + +
Sbjct: 21  QEFDQK-HITEYSNRIYKHQKHITEYSNRIYK----HQKHLTEYSNRIYKHQKHLTEYSN 75

Query: 183 KFVPY*KHT*FCNIHVRDNRAYSHQA 260
           +   + KH     I    NR Y HQ+
Sbjct: 76  RIYKHQKH-----ITEYSNRIYKHQS 96


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,766,815
Number of Sequences: 59808
Number of extensions: 432660
Number of successful extensions: 1032
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)