Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0576
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   4.8  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   8.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.5  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +3

Query: 24  SFNENSNRYYEESDSFNENSNRL 92
           ++N N N Y   ++++N N  +L
Sbjct: 329 NYNNNYNNYNNYNNNYNNNYKKL 351


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 27  FNENSNRYYEESDSFNENSNR 89
           +N N N+    S S N+N+N+
Sbjct: 425 YNHNHNQARHSSKSDNQNNNQ 445


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 92   GSVIAGRQSPYTSRKFQDLIIYANSFL 172
            GSV+ G+Q P   +  Q  II  +  L
Sbjct: 1222 GSVVLGKQQPSQQQTQQQPIILPSQLL 1248


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,494
Number of Sequences: 438
Number of extensions: 4194
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)