Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0576
(697 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati... 29 2.9
At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati... 29 2.9
At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATP... 29 2.9
At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putati... 29 2.9
At2g36700.1 68415.m04503 pectinesterase family protein contains ... 28 5.1
At3g24860.1 68416.m03118 hydroxyproline-rich glycoprotein family... 28 6.8
At5g48600.1 68418.m06011 structural maintenance of chromosomes (... 27 9.0
>At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 29.1 bits (62), Expect = 2.9
Identities = 22/68 (32%), Positives = 36/68 (52%)
Frame = +3
Query: 381 KLPLKPSCYSEISHPTGTLTGSSRTDYPREHKWLI*VQQLHSRSRYKRPYRVPSLTHYLK 560
++P+ +I+HPT LTG Y E + I +QLH+R Y +PSL+ +K
Sbjct: 327 QIPILTMPNDDITHPTPDLTG-----YITEGQIYI-DRQLHNRQIYPPINVLPSLSRLMK 380
Query: 561 NAQKKRLT 584
+A + +T
Sbjct: 381 SAIGEGMT 388
>At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 29.1 bits (62), Expect = 2.9
Identities = 22/68 (32%), Positives = 36/68 (52%)
Frame = +3
Query: 381 KLPLKPSCYSEISHPTGTLTGSSRTDYPREHKWLI*VQQLHSRSRYKRPYRVPSLTHYLK 560
++P+ +I+HPT LTG Y E + I +QLH+R Y +PSL+ +K
Sbjct: 327 QIPILTMPNDDITHPTPDLTG-----YITEGQIYI-DRQLHNRQIYPPINVLPSLSRLMK 380
Query: 561 NAQKKRLT 584
+A + +T
Sbjct: 381 SAIGEGMT 388
>At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATPase
B subunit / vacuolar proton pump B subunit / V-ATPase 57
kDa subunit identical to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}
Length = 486
Score = 29.1 bits (62), Expect = 2.9
Identities = 22/68 (32%), Positives = 36/68 (52%)
Frame = +3
Query: 381 KLPLKPSCYSEISHPTGTLTGSSRTDYPREHKWLI*VQQLHSRSRYKRPYRVPSLTHYLK 560
++P+ +I+HPT LTG Y E + I +QLH+R Y +PSL+ +K
Sbjct: 326 QIPILTMPNDDITHPTPDLTG-----YITEGQIYI-DRQLHNRQIYPPINVLPSLSRLMK 379
Query: 561 NAQKKRLT 584
+A + +T
Sbjct: 380 SAIGEGMT 387
>At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 485
Score = 29.1 bits (62), Expect = 2.9
Identities = 22/68 (32%), Positives = 36/68 (52%)
Frame = +3
Query: 381 KLPLKPSCYSEISHPTGTLTGSSRTDYPREHKWLI*VQQLHSRSRYKRPYRVPSLTHYLK 560
++P+ +I+HPT LTG Y E + I +QLH+R Y +PSL+ +K
Sbjct: 325 QIPILTMPNDDITHPTPDLTG-----YITEGQIYI-DRQLHNRQIYPPINVLPSLSRLMK 378
Query: 561 NAQKKRLT 584
+A + +T
Sbjct: 379 SAIGEGMT 386
>At2g36700.1 68415.m04503 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 333
Score = 28.3 bits (60), Expect = 5.1
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = -1
Query: 328 LSKESGQV*INCQTKQVSRA-IGRAWCEYARLSLT*ILQNYVCF**GTN-LSSNKERISI 155
L +G V +NC+ +R +GRAW YAR+ + + V G N + K + ++
Sbjct: 230 LKDRTGFVFVNCKITGSARVWLGRAWRPYARVIFSKTYMSRVVSLDGWNDMGDPKTQRTV 289
Query: 154 YY 149
YY
Sbjct: 290 YY 291
>At3g24860.1 68416.m03118 hydroxyproline-rich glycoprotein family
protein contains proline-rich domains,
INTERPRO:IPR000694
Length = 310
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +3
Query: 345 ISSSSEKLAIAGKLPLKPSCYSEISHPTGTLTGSSRTDYPREHKWLI*VQQLHSRSRYKR 524
I S EK G+ PLK + + EI+ + +G RT HK ++++ R R +R
Sbjct: 74 IESYKEKWFAIGRGPLKSTHWEEIAVAASSRSGVERTSTQCRHK----IEKMRKRFRSER 129
>At5g48600.1 68418.m06011 structural maintenance of chromosomes
(SMC) family protein similar to SP|P50532 Chromosome
assembly protein XCAP-C {Xenopus laevis}; contains Pfam
profiles PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1241
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = +3
Query: 15 TRASFNENSNRYY--EESDSFNENSNRL 92
TR +F +NS++YY E S +F E + +L
Sbjct: 128 TRVAFRDNSSKYYINERSSNFTEVTKKL 155
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,380,510
Number of Sequences: 28952
Number of extensions: 295708
Number of successful extensions: 660
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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