Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0575
         (401 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...   130   8e-32
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...   129   1e-31
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ...    31   0.051
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    27   1.1  
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    26   2.5  
SPAC18G6.06 |||U3 snoRNP-associated protein Utp11|Schizosaccharo...    25   3.3  
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo...    25   4.4  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    25   5.8  
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy...    25   5.8  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    24   7.7  
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ...    24   7.7  

>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  130 bits (314), Expect = 8e-32
 Identities = 68/119 (57%), Positives = 81/119 (68%)
 Frame = -3

Query: 399 YNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRS 220
           Y+ SNNELVRT TL K+AIV +DA PFR WYE+HY + +G  KG K T          +S
Sbjct: 83  YHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG-SKGKKATSTPNP-----KS 136

Query: 219 QKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRR 43
           +   RK+ AR   +KV+ ALE QF  GRL A V+SRPGQ GR DGYILEG+EL FYLRR
Sbjct: 137 KHVQRKHSARLGDSKVDSALETQFAAGRLYAVVSSRPGQSGRCDGYILEGEELHFYLRR 195


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  129 bits (312), Expect = 1e-31
 Identities = 68/119 (57%), Positives = 81/119 (68%)
 Frame = -3

Query: 399 YNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRS 220
           Y+ SNNELVRT TL K+AIV +DA PFR WYE+HY + +G  KG K T          +S
Sbjct: 83  YHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG-SKGKKATATPTP-----KS 136

Query: 219 QKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRR 43
           +   RK+ AR   +KV+ ALE QF  GRL A V+SRPGQ GR DGYILEG+EL FYLRR
Sbjct: 137 KHVQRKHSARLGDSKVDSALETQFAAGRLYAVVSSRPGQSGRCDGYILEGEELHFYLRR 195


>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 655

 Score = 31.5 bits (68), Expect = 0.051
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +3

Query: 69  CLLRCNHRRDHTDLGDSPRKPANALCGIALLE 164
           CLLR  H+RD  +  +  RK  N L G  LLE
Sbjct: 440 CLLRSKHKRDKANPENKERKLVNNLLGAQLLE 471


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 16/73 (21%), Positives = 33/73 (45%)
 Frame = -3

Query: 330 ATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQ 151
           +TP     + H       KKG+K+  A++    ++R  + AR+  A +   K   ++E+ 
Sbjct: 754 STPDTTGSDIHIVSEKRGKKGSKVITAKKVSAKERREARRARRQTALEESLKAPISIEDA 813

Query: 150 FHTGRLLACVASR 112
                +LA +  +
Sbjct: 814 TDPQTILAILKQK 826


>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 308 YHCLNGVASTTTIAFLTRVFVRTNS 382
           ++C N V S T +  +  VFVR NS
Sbjct: 518 FYCSNEVLSLTALLSVPNVFVRPNS 542


>SPAC18G6.06 |||U3 snoRNP-associated protein
           Utp11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = -3

Query: 237 INKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGK 67
           ++ K  +K A + L RQ+  K   A EE+    RLL       G+ GR    ++ GK
Sbjct: 188 LHSKLKEKAATELLLRQKRDKKLAAAEERVELDRLL------QGKGGRQKKKVVNGK 238


>SPAC25H1.06 |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 82  VTIGATTLTWATRHASQ-QTPCVELLF*STLNLSKTLPCQ 198
           +T+G T+L+W+ RH+ +  + C E  +    N +K  P +
Sbjct: 329 LTLGGTSLSWSWRHSGRIVSACQEYCY--VWNFNKANPLE 366


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 364 DPCQECNCCSRCNSIQAVV 308
           D C++   CS+C+++Q VV
Sbjct: 145 DHCKKMRRCSKCDAMQGVV 163


>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 581

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 89  SARPH*PGRLATQASKRPVWNCSSRAPSTLARRC 190
           S +PH P +  T+   +P  +  S   S LAR+C
Sbjct: 154 SEQPHTPCKKGTKIKLKPPQSPLSPTTSLLARKC 187


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1225

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 11/43 (25%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = -3

Query: 339  VVDATPFRQWYESHYTLPLGRKKGA---KLTEAEEAIINKKRS 220
            V+D    +Q  +++Y +PL  K+G    ++T + + ++  KR+
Sbjct: 1121 VIDCKLLQQQQQTNYEIPLDSKQGVLYLRITLSPKWVLRSKRA 1163


>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 314

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +1

Query: 352 LDKGLCTHQFI 384
           L+KG CTHQF+
Sbjct: 92  LEKGECTHQFV 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,202,805
Number of Sequences: 5004
Number of extensions: 17236
Number of successful extensions: 74
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)