Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0575
(401 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 151 2e-37
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 136 8e-33
04_04_0799 + 28143878-28145042,28145127-28145290,28146008-281460... 28 3.2
04_03_0549 - 17043135-17043351,17043641-17043846 27 4.2
10_07_0170 - 13777590-13777973,13778073-13778339 27 5.6
06_03_0451 - 20925100-20926734 27 7.3
05_05_0226 + 23442971-23443857,23444209-23446324 27 7.3
02_02_0391 - 9646256-9646528 27 7.3
11_01_0551 + 4361640-4363386,4363443-4363687 26 9.7
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 151 bits (366), Expect = 2e-37
Identities = 76/134 (56%), Positives = 95/134 (70%), Gaps = 8/134 (5%)
Frame = -3
Query: 399 YNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLT--------EAEE 244
YNASNNELVRT+TLVK+AIV VDA PF+QWY +HY + +GRKK A E E
Sbjct: 84 YNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKAPAAKKDAAEGQEGEA 143
Query: 243 AIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKE 64
A K+S RK RQ+ ++ +EEQF +GRLLAC++SRPGQCGRADGYILEGKE
Sbjct: 144 ATEEAKKSNHVVRKLEKRQQTRTLDSHIEEQFGSGRLLACISSRPGQCGRADGYILEGKE 203
Query: 63 LEFYLRRDQV*EGE 22
LEFY+++ Q +G+
Sbjct: 204 LEFYMKKLQRKKGK 217
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 136 bits (328), Expect = 8e-33
Identities = 76/151 (50%), Positives = 96/151 (63%), Gaps = 25/151 (16%)
Frame = -3
Query: 399 YNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGA--------------- 265
YNASNNELVRT+TLVK+AIV VDA PF+QWY +HY + +GRKK A
Sbjct: 84 YNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKAPAAKKDAEHALGKIR 143
Query: 264 ----------KLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVAS 115
K +AE K+S RK RQ+ ++ +EEQF +GRLLAC++S
Sbjct: 144 CLFIGLYVMLKGQDAEATTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRLLACISS 203
Query: 114 RPGQCGRADGYILEGKELEFYLRRDQV*EGE 22
RPGQCGRADGYILEGKELEFY+++ Q +G+
Sbjct: 204 RPGQCGRADGYILEGKELEFYMKKLQRKKGK 234
>04_04_0799 +
28143878-28145042,28145127-28145290,28146008-28146070,
28146268-28146491,28146850-28147555
Length = 773
Score = 27.9 bits (59), Expect = 3.2
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -3
Query: 273 KGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHT 142
KG+KL + E + + R++ A R LA GAL + H+
Sbjct: 4 KGSKLEDQEAVALCRGRAELLAAAVRHRYALADAHGALADSLHS 47
>04_03_0549 - 17043135-17043351,17043641-17043846
Length = 140
Score = 27.5 bits (58), Expect = 4.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 295 IMRLIPLPEWSCIYYNNCILDKGL 366
++ L+ +P+WS +YY N +DK L
Sbjct: 72 LILLLLVPKWSIVYYLNSKIDKKL 95
>10_07_0170 - 13777590-13777973,13778073-13778339
Length = 216
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -3
Query: 222 SQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPG 106
+Q ++ A AK+EGA + + GR+ +A PG
Sbjct: 94 AQYILEQFRATTGCAKIEGAAKSMYAAGRVRMAMAPEPG 132
>06_03_0451 - 20925100-20926734
Length = 544
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 154 LF*STLNLSKTLPCQVFSCCLLTSLLVDN 240
++ S N S+ LP + C LL L++DN
Sbjct: 394 IYASNNNFSRNLPANLGDCVLLQELVLDN 422
>05_05_0226 + 23442971-23443857,23444209-23446324
Length = 1000
Score = 26.6 bits (56), Expect = 7.3
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -3
Query: 246 EAIINKKRSQK-TARKYLARQRLAKVEGALEEQFHTGRLLACVAS 115
E ++NK SQ A+ RL A FH+G L CVAS
Sbjct: 521 EFLLNKSLSQIFIAKSSRDHPRLGVNTNACHLSFHSGELTECVAS 565
>02_02_0391 - 9646256-9646528
Length = 90
Score = 26.6 bits (56), Expect = 7.3
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 84 NHRRDHTDLGDSPRKPANALCG 149
N RR H D+ D PR+ CG
Sbjct: 29 NTRRQHIDIRDKPRQTQYGACG 50
>11_01_0551 + 4361640-4363386,4363443-4363687
Length = 663
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -3
Query: 276 KKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQ 151
+ G+ T+A E+I KK+ + +K + + A V A EE+
Sbjct: 289 QNGSFTTQAAESIKEKKKRAEKKKKKKKKVKAASVAAAAEEE 330
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,295,148
Number of Sequences: 37544
Number of extensions: 128237
Number of successful extensions: 505
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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