Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0575
(401 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0) 177 2e-45
SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32) 33 0.12
SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068) 31 0.27
SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31) 30 0.81
SB_11| Best HMM Match : E6 (HMM E-Value=2.2) 29 1.4
SB_26394| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.88) 29 1.9
SB_38738| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.5
SB_43663| Best HMM Match : F-box (HMM E-Value=4e-07) 27 5.7
SB_30912| Best HMM Match : SEA (HMM E-Value=1.1) 27 7.6
SB_24569| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_58994| Best HMM Match : EGF_CA (HMM E-Value=2.3e-29) 26 10.0
SB_38285| Best HMM Match : Collagen (HMM E-Value=0.031) 26 10.0
SB_26842| Best HMM Match : Collagen (HMM E-Value=0.031) 26 10.0
SB_57511| Best HMM Match : EGF_CA (HMM E-Value=0) 26 10.0
>SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)
Length = 192
Score = 177 bits (432), Expect = 2e-45
Identities = 83/119 (69%), Positives = 96/119 (80%)
Frame = -3
Query: 399 YNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRS 220
YNASNNELVRTKTLVKN IV VD+TPFRQWYE+HY +P+GRKK + TE E+ I+NKKRS
Sbjct: 67 YNASNNELVRTKTLVKNCIVQVDSTPFRQWYEAHYAIPIGRKKTKQPTEEEQEILNKKRS 126
Query: 219 QKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRR 43
RK AR+ AKV +EEQF TGRL ACV+SRPGQ GR DGYILEGKELEFY+++
Sbjct: 127 NHCTRKLEARKANAKVAPGMEEQFVTGRLYACVSSRPGQSGRCDGYILEGKELEFYIKK 185
>SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)
Length = 905
Score = 32.7 bits (71), Expect = 0.12
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -3
Query: 228 KRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGK 67
++S+K K + +L +EG E H G LL S C R GY ++G+
Sbjct: 133 EKSEKYTEKKIRSDKLTWIEGNEEGASHIGDLLLKYDSLVSSCSRRIGYDIQGR 186
>SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)
Length = 147
Score = 31.5 bits (68), Expect = 0.27
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -3
Query: 399 YNASNNELVRTKTLVKNAIVVVDATPFRQWYESH 298
++ +N E + +VK +IV VD PF W++ +
Sbjct: 80 HSFANKEHIERNVIVKGSIVQVDNKPFEDWFQEY 113
>SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)
Length = 883
Score = 29.9 bits (64), Expect = 0.81
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = -3
Query: 273 KGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGR 136
+ AKL + EE II K+ + TA + ++ K++ ALE +G+
Sbjct: 701 RAAKLQQEEEEIIRKREANNTALAAIGPRKKRKLDEALEATRPSGQ 746
>SB_11| Best HMM Match : E6 (HMM E-Value=2.2)
Length = 485
Score = 29.1 bits (62), Expect = 1.4
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
Frame = -3
Query: 321 FRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLA---KVEGALE-- 157
F W + L + +G + E +E + N +KT + YL K++GA E
Sbjct: 174 FEAWKDIRKVLLNYKNEGTGIVEVDEGVTNN--IEKTLKLYLISPNHEIDQKLKGAPEKD 231
Query: 156 ----EQFHTGRLLACVASRPGQCGRADGYILEG 70
E FH L CV + + DGY L G
Sbjct: 232 IYFYETFHFLGGLQCVPLQENEISITDGYALMG 264
>SB_26394| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.88)
Length = 842
Score = 28.7 bits (61), Expect = 1.9
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 154 AIPHRAFAGLRGESPRSVW 98
A PH A +G+R SPR +W
Sbjct: 108 ACPHHAVSGVRVSSPRGIW 126
Score = 28.3 bits (60), Expect = 2.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 154 AIPHRAFAGLRGESPRSVW 98
A PH A +G+R PRS+W
Sbjct: 139 AYPHHAVSGVRVSPPRSIW 157
Score = 28.3 bits (60), Expect = 2.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 154 AIPHRAFAGLRGESPRSVW 98
A PH A +G+R PRS+W
Sbjct: 201 ACPHHAVSGVRVSPPRSIW 219
Score = 28.3 bits (60), Expect = 2.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 154 AIPHRAFAGLRGESPRSVW 98
A PH A +G+R PRS+W
Sbjct: 232 ACPHHAVSGVRVSPPRSIW 250
>SB_38738| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 28.3 bits (60), Expect = 2.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 231 KKRSQKTARKYLARQRLAKVEGALEE 154
K+R QK + Y RQR ++ +LEE
Sbjct: 15 KRRKQKATKSYAERQRRTRINKSLEE 40
>SB_43663| Best HMM Match : F-box (HMM E-Value=4e-07)
Length = 717
Score = 27.1 bits (57), Expect = 5.7
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 175 LSKTLPCQVFSCCLLTSLLVD 237
+ K+LP + SC LLTSL++D
Sbjct: 523 IGKSLPLLINSCTLLTSLVLD 543
>SB_30912| Best HMM Match : SEA (HMM E-Value=1.1)
Length = 354
Score = 26.6 bits (56), Expect = 7.6
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -3
Query: 300 HYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRL 181
++TL GAKLT + + KK S T + +A +++
Sbjct: 94 NFTLDANHPLGAKLTTTKNPLTRKKNSVDTEKDSVATEKI 133
>SB_24569| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1660
Score = 26.6 bits (56), Expect = 7.6
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = -3
Query: 249 EEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEG 70
E ++ KR K+ L + +K++ E+ RL AC+ G C A+ + EG
Sbjct: 1353 ETLVLAVKRRMKSLLAELDSRSESKLDKLRTEKV---RLEACLRGAQGSCEFAETVLSEG 1409
Query: 69 KELE 58
+LE
Sbjct: 1410 NDLE 1413
>SB_58994| Best HMM Match : EGF_CA (HMM E-Value=2.3e-29)
Length = 309
Score = 26.2 bits (55), Expect = 10.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 325 SCIYYNNCILDKGLC 369
+C+ N CIL KGLC
Sbjct: 210 TCVDMNECILGKGLC 224
>SB_38285| Best HMM Match : Collagen (HMM E-Value=0.031)
Length = 204
Score = 26.2 bits (55), Expect = 10.0
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Frame = -3
Query: 282 GRKKGAKLTEAEEAIINKKRSQKTARK--YLARQRLAKVEGALEEQFHTGRLLACVASRP 109
GR+ G L + + + Q+TARK A+ LA+ + +F R +A P
Sbjct: 33 GRENGDHLATTDHVVFQEHPDQRTARKSDVAAKLDLARNRTCHDNKFVFSREIAVSMESP 92
Query: 108 GQCGRADGYILEG-KELEFYLRRDQ 37
D +G +E +L R +
Sbjct: 93 DYLATKDHGASKGWRERPVFLERGE 117
>SB_26842| Best HMM Match : Collagen (HMM E-Value=0.031)
Length = 186
Score = 26.2 bits (55), Expect = 10.0
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Frame = -3
Query: 282 GRKKGAKLTEAEEAIINKKRSQKTARK--YLARQRLAKVEGALEEQFHTGRLLACVASRP 109
GR+ G L + + + Q+TARK A+ LA+ + +F R +A P
Sbjct: 15 GRENGDHLATTDHVVFQEHPDQRTARKSDVAAKLDLARNRTCHDNKFVFSREIAVSMESP 74
Query: 108 GQCGRADGYILEG-KELEFYLRRDQ 37
D +G +E +L R +
Sbjct: 75 DYLATKDHGASKGWRERPVFLERGE 99
>SB_57511| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 879
Score = 26.2 bits (55), Expect = 10.0
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 166 CSRRAIPHRAFAGL 125
CSRR +PHR F L
Sbjct: 195 CSRRCVPHRVFISL 208
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,648,338
Number of Sequences: 59808
Number of extensions: 144613
Number of successful extensions: 498
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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