Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0575
         (401 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X67247-1|CAA47670.1|  208|Homo sapiens ribosomal protein S8 prot...   201   6e-52
BC070875-1|AAH70875.1|  208|Homo sapiens ribosomal protein S8 pr...   201   6e-52
AL592166-8|CAI13002.1|  188|Homo sapiens ribosomal protein S8 pr...   201   6e-52
AL592166-7|CAI13003.1|  208|Homo sapiens ribosomal protein S8 pr...   201   6e-52
AB062401-1|BAB93488.1|  208|Homo sapiens ribosomal protein S8 pr...   201   6e-52
BC005678-1|AAH05678.1|   80|Homo sapiens Similar to ribosomal pr...   112   5e-25
CR457284-1|CAG33565.1|  201|Homo sapiens FLJ11749 protein.             31   1.9  
BC010108-1|AAH10108.1|  201|Homo sapiens chromatin modifying pro...    31   1.9  
AY329087-1|AAQ91196.1|  201|Homo sapiens VPS20 protein.                31   1.9  
AK021811-1|BAB13901.1|  201|Homo sapiens protein ( Homo sapiens ...    31   1.9  
BC037399-1|AAH37399.1|  446|Homo sapiens KIAA0415 protein protein.     29   4.4  
BC008841-1|AAH08841.2|  391|Homo sapiens KIAA0415 protein protein.     29   4.4  
AB007875-1|BAA24845.1|  634|Homo sapiens KIAA0415 protein.             29   4.4  
AK223187-1|BAD96907.1|  201|Homo sapiens hypothetical protein FL...    29   5.8  
AK127331-1|BAC86934.1|  178|Homo sapiens , member 1 (TRPV1).  pr...    29   5.8  
BC014311-1|AAH14311.1|  376|Homo sapiens FCHO2 protein protein.        29   7.7  

>X67247-1|CAA47670.1|  208|Homo sapiens ribosomal protein S8
           protein.
          Length = 208

 Score =  201 bits (491), Expect = 6e-52
 Identities = 91/126 (72%), Positives = 108/126 (85%)
 Frame = -3

Query: 399 YNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRS 220
           YNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT  EE I+NKKRS
Sbjct: 83  YNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRS 142

Query: 219 QKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRRD 40
           +K  +KY  R++ AK+   LEEQF  G+LLAC+ASRPGQCGRADGY+LEGKELEFYLR+ 
Sbjct: 143 KKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKI 202

Query: 39  QV*EGE 22
           +  +G+
Sbjct: 203 KARKGK 208


>BC070875-1|AAH70875.1|  208|Homo sapiens ribosomal protein S8
           protein.
          Length = 208

 Score =  201 bits (491), Expect = 6e-52
 Identities = 91/126 (72%), Positives = 108/126 (85%)
 Frame = -3

Query: 399 YNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRS 220
           YNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT  EE I+NKKRS
Sbjct: 83  YNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRS 142

Query: 219 QKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRRD 40
           +K  +KY  R++ AK+   LEEQF  G+LLAC+ASRPGQCGRADGY+LEGKELEFYLR+ 
Sbjct: 143 KKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKI 202

Query: 39  QV*EGE 22
           +  +G+
Sbjct: 203 KARKGK 208


>AL592166-8|CAI13002.1|  188|Homo sapiens ribosomal protein S8
           protein.
          Length = 188

 Score =  201 bits (491), Expect = 6e-52
 Identities = 91/126 (72%), Positives = 108/126 (85%)
 Frame = -3

Query: 399 YNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRS 220
           YNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT  EE I+NKKRS
Sbjct: 63  YNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRS 122

Query: 219 QKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRRD 40
           +K  +KY  R++ AK+   LEEQF  G+LLAC+ASRPGQCGRADGY+LEGKELEFYLR+ 
Sbjct: 123 KKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKI 182

Query: 39  QV*EGE 22
           +  +G+
Sbjct: 183 KARKGK 188


>AL592166-7|CAI13003.1|  208|Homo sapiens ribosomal protein S8
           protein.
          Length = 208

 Score =  201 bits (491), Expect = 6e-52
 Identities = 91/126 (72%), Positives = 108/126 (85%)
 Frame = -3

Query: 399 YNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRS 220
           YNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT  EE I+NKKRS
Sbjct: 83  YNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRS 142

Query: 219 QKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRRD 40
           +K  +KY  R++ AK+   LEEQF  G+LLAC+ASRPGQCGRADGY+LEGKELEFYLR+ 
Sbjct: 143 KKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKI 202

Query: 39  QV*EGE 22
           +  +G+
Sbjct: 203 KARKGK 208


>AB062401-1|BAB93488.1|  208|Homo sapiens ribosomal protein S8
           protein.
          Length = 208

 Score =  201 bits (491), Expect = 6e-52
 Identities = 91/126 (72%), Positives = 108/126 (85%)
 Frame = -3

Query: 399 YNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRS 220
           YNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT  EE I+NKKRS
Sbjct: 83  YNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRS 142

Query: 219 QKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRRD 40
           +K  +KY  R++ AK+   LEEQF  G+LLAC+ASRPGQCGRADGY+LEGKELEFYLR+ 
Sbjct: 143 KKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKI 202

Query: 39  QV*EGE 22
           +  +G+
Sbjct: 203 KARKGK 208


>BC005678-1|AAH05678.1|   80|Homo sapiens Similar to ribosomal
           protein S8 protein.
          Length = 80

 Score =  112 bits (269), Expect = 5e-25
 Identities = 51/80 (63%), Positives = 64/80 (80%)
 Frame = -3

Query: 261 LTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGY 82
           LT  EE I+NKKRS+K  +KY  R++ AK+   LEEQF  G+LLAC+ASRPGQCGRADGY
Sbjct: 1   LTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGY 60

Query: 81  ILEGKELEFYLRRDQV*EGE 22
           +LEGKELEFYLR+ +  +G+
Sbjct: 61  VLEGKELEFYLRKIKARKGK 80


>CR457284-1|CAG33565.1|  201|Homo sapiens FLJ11749 protein.
          Length = 201

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = -3

Query: 282 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 136
           GRKK +++TE ++AI+  K+ +   R+Y  R  Q+L +      +    GR
Sbjct: 6   GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56


>BC010108-1|AAH10108.1|  201|Homo sapiens chromatin modifying
           protein 6 protein.
          Length = 201

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = -3

Query: 282 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 136
           GRKK +++TE ++AI+  K+ +   R+Y  R  Q+L +      +    GR
Sbjct: 6   GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56


>AY329087-1|AAQ91196.1|  201|Homo sapiens VPS20 protein.
          Length = 201

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = -3

Query: 282 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 136
           GRKK +++TE ++AI+  K+ +   R+Y  R  Q+L +      +    GR
Sbjct: 6   GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56


>AK021811-1|BAB13901.1|  201|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11749 fis, clone HEMBA1005558, weakly similar to
           NUCLEAR PROTEIN SNF7. ).
          Length = 201

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = -3

Query: 282 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 136
           GRKK +++TE ++AI+  K+ +   R+Y  R  Q+L +      +    GR
Sbjct: 6   GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56


>BC037399-1|AAH37399.1|  446|Homo sapiens KIAA0415 protein protein.
          Length = 446

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +2

Query: 113 RLATQASKRPVWNCSSRAPSTL 178
           R A  AS+RP+W+ S RAPS L
Sbjct: 329 RSAPAASERPLWDTSLRAPSCL 350


>BC008841-1|AAH08841.2|  391|Homo sapiens KIAA0415 protein protein.
          Length = 391

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +2

Query: 113 RLATQASKRPVWNCSSRAPSTL 178
           R A  AS+RP+W+ S RAPS L
Sbjct: 69  RSAPAASERPLWDTSLRAPSCL 90


>AB007875-1|BAA24845.1|  634|Homo sapiens KIAA0415 protein.
          Length = 634

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +2

Query: 113 RLATQASKRPVWNCSSRAPSTL 178
           R A  AS+RP+W+ S RAPS L
Sbjct: 506 RSAPAASERPLWDTSLRAPSCL 527


>AK223187-1|BAD96907.1|  201|Homo sapiens hypothetical protein
           FLJ11749 variant protein.
          Length = 201

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -3

Query: 282 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 136
           GRKK +++TE  +AI+  K+ +   R+Y  R  Q+L +      +    GR
Sbjct: 6   GRKKQSRVTEQGKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56


>AK127331-1|BAC86934.1|  178|Homo sapiens , member 1 (TRPV1).
           protein.
          Length = 178

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 351 NAIVVVDATPFRQWYESHYTLPLGRKKGAKLT 256
           N I+ V  TPF  W + H++ P     G  LT
Sbjct: 5   NPIIAVFRTPFAPWLQFHWSAPFSAWLGTVLT 36


>BC014311-1|AAH14311.1|  376|Homo sapiens FCHO2 protein protein.
          Length = 376

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -3

Query: 279 RKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVE 169
           +K+GA   E E+A +  K++  T + Y+ +  LAK +
Sbjct: 152 KKEGATQREIEKAAVKSKKATDTYKLYVEKYALAKAD 188


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,720,170
Number of Sequences: 237096
Number of extensions: 734709
Number of successful extensions: 2022
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2022
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2928276690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)