Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0575
(401 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal prote... 177 2e-45
U88315-4|AAB42369.3| 778|Caenorhabditis elegans Hypothetical pr... 28 2.9
Z29115-3|CAA82361.1| 347|Caenorhabditis elegans Hypothetical pr... 27 3.8
Z93396-3|CAB07712.1| 597|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical pr... 26 8.8
Z81513-2|CAB04186.2| 489|Caenorhabditis elegans Hypothetical pr... 26 8.8
Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical pr... 26 8.8
AF515833-1|AAM55225.1| 489|Caenorhabditis elegans synaptonemal ... 26 8.8
AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain sp... 26 8.8
>U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 8 protein.
Length = 208
Score = 177 bits (431), Expect = 2e-45
Identities = 82/119 (68%), Positives = 98/119 (82%)
Frame = -3
Query: 399 YNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRS 220
YNA+NNELVRTKTLVK AI+ VDA PFRQWYE+HY LPL RKK AKL+E + AI+NKKRS
Sbjct: 83 YNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALPLARKKNAKLSEEDNAILNKKRS 142
Query: 219 QKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRR 43
T +KY RQ+ A V+ L EQF+TGRLLA ++S PGQ G+A+GYILEGKEL+FYLR+
Sbjct: 143 HHTMKKYTERQKTAAVDALLIEQFNTGRLLARISSSPGQVGQANGYILEGKELDFYLRK 201
>U88315-4|AAB42369.3| 778|Caenorhabditis elegans Hypothetical
protein C37H5.5 protein.
Length = 778
Score = 27.9 bits (59), Expect = 2.9
Identities = 15/42 (35%), Positives = 27/42 (64%)
Frame = -3
Query: 279 RKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEE 154
+K G A++ I K+++ KTA+KY +++LA++E L E
Sbjct: 424 KKSGKDALIAKKYQIKKEKASKTAKKY--KKQLARLEADLLE 463
>Z29115-3|CAA82361.1| 347|Caenorhabditis elegans Hypothetical
protein T26G10.4 protein.
Length = 347
Score = 27.5 bits (58), Expect = 3.8
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = -3
Query: 276 KKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCG 97
KK A L +A E N+K + K + R +V AL+ +FHT +L+ SR Q
Sbjct: 257 KKLAVLVQATEDS-NEKLFTEDGVKKMQRAMNEQVSRALKHRFHTTKLVKSEISRVVQMH 315
Query: 96 RADG-YILEGKELEFYLRR 43
A ++ G L R
Sbjct: 316 PASNKFVARGGNLSLACHR 334
>Z93396-3|CAB07712.1| 597|Caenorhabditis elegans Hypothetical
protein ZC15.5 protein.
Length = 597
Score = 27.1 bits (57), Expect = 5.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 146 WNCSSRAPSTLARRCLA 196
W C +RAP+T+ RC A
Sbjct: 555 WTCQTRAPTTIILRCPA 571
>Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 26.2 bits (55), Expect = 8.8
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Frame = -3
Query: 387 NNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINK--KRSQK 214
N+E K L K+ + D T +RQW E K +L E+ + + KR +
Sbjct: 1696 NDEDAARKLLSKHRALCEDMTTYRQWLEKL------EVKCVELVESNRPHVERFQKRQDE 1749
Query: 213 TARKYLARQRLAK-VEGALEE 154
R++ A +LA+ ALE+
Sbjct: 1750 LVREFDALSKLAEDRRNALED 1770
>Z81513-2|CAB04186.2| 489|Caenorhabditis elegans Hypothetical
protein F26D2.2 protein.
Length = 489
Score = 26.2 bits (55), Expect = 8.8
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Frame = -3
Query: 399 YNASNNELVRTKTLV---KNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINK 229
Y A E + K L+ K +I+ + + +S+ RKK +T ++AI +
Sbjct: 286 YEARQQEDIENKKLIEERKRSIIELLRRKIAEKKKSNTVKGSDRKK---ITSLKKAIAKE 342
Query: 228 KRSQKTARKYLARQRLAKVEGALEEQFHTGRL 133
+ + +K L + + +K E LEE+ +L
Sbjct: 343 QEKLEKGKKELEQLQSSKTESDLEEEISAMQL 374
>Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 26.2 bits (55), Expect = 8.8
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Frame = -3
Query: 387 NNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINK--KRSQK 214
N+E K L K+ + D T +RQW E K +L E+ + + KR +
Sbjct: 1696 NDEDAARKLLSKHRALCEDMTTYRQWLEKL------EVKCVELVESNRPHVERFQKRQDE 1749
Query: 213 TARKYLARQRLAK-VEGALEE 154
R++ A +LA+ ALE+
Sbjct: 1750 LVREFDALSKLAEDRRNALED 1770
>AF515833-1|AAM55225.1| 489|Caenorhabditis elegans synaptonemal
complex protein SYP-1 protein.
Length = 489
Score = 26.2 bits (55), Expect = 8.8
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Frame = -3
Query: 399 YNASNNELVRTKTLV---KNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINK 229
Y A E + K L+ K +I+ + + +S+ RKK +T ++AI +
Sbjct: 286 YEARQQEDIENKKLIEERKRSIIELLRRKIAEKKKSNTVKGSDRKK---ITSLKKAIAKE 342
Query: 228 KRSQKTARKYLARQRLAKVEGALEEQFHTGRL 133
+ + +K L + + +K E LEE+ +L
Sbjct: 343 QEKLEKGKKELEQLQSSKTESDLEEEISAMQL 374
>AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain
spectrin homolog Sma1 protein.
Length = 4063
Score = 26.2 bits (55), Expect = 8.8
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Frame = -3
Query: 387 NNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINK--KRSQK 214
N+E K L K+ + D T +RQW E K +L E+ + + KR +
Sbjct: 1696 NDEDAARKLLSKHRALCEDMTTYRQWLEKL------EVKCVELVESNRPHVERFQKRQDE 1749
Query: 213 TARKYLARQRLAK-VEGALEE 154
R++ A +LA+ ALE+
Sbjct: 1750 LVREFDALSKLAEDRRNALED 1770
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,891,160
Number of Sequences: 27780
Number of extensions: 104155
Number of successful extensions: 386
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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