Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0575
         (401 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) riboso...   152   7e-38
At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S ri...   149   7e-37
At2g47990.1 68415.m06006 transducin family protein / WD-40 repea...    31   0.29 
At1g73260.1 68414.m08478 trypsin and protease inhibitor family p...    29   1.2  
At5g05240.1 68418.m00560 expressed protein similar to unknown pr...    27   4.7  
At1g53430.1 68414.m06056 leucine-rich repeat family protein / pr...    27   6.2  

>At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) ribosomal
           protein S8 - Zea mays, PIR:T04088
          Length = 222

 Score =  152 bits (369), Expect = 7e-38
 Identities = 80/136 (58%), Positives = 98/136 (72%), Gaps = 10/136 (7%)
 Frame = -3

Query: 399 YNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKK-GAKLT-----EAEEAI 238
           YNASNNELVRTKTLVK+AIV VDA PF+QWY SHY + LGRKK  A  T     E EEA 
Sbjct: 84  YNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGVELGRKKKSASSTKKDGEEGEEAA 143

Query: 237 I----NKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEG 70
           +      K+S    RK  +RQ    ++  +E+QF +GRLLAC++SRPGQCGRADGYILEG
Sbjct: 144 VAAPEEVKKSNHLLRKIASRQEGRSLDSHIEDQFASGRLLACISSRPGQCGRADGYILEG 203

Query: 69  KELEFYLRRDQV*EGE 22
           KELEFY+++ Q  +G+
Sbjct: 204 KELEFYMKKIQKKKGK 219


>At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S
           ribosomal protein S8, Prunus armeniaca, EMBL:AF071889
          Length = 210

 Score =  149 bits (361), Expect = 7e-37
 Identities = 75/126 (59%), Positives = 91/126 (72%)
 Frame = -3

Query: 399 YNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRS 220
           YNASNNELVRT+TLVK+AIV VDA PF+Q Y  HY + +GRKK  +    EE     K+S
Sbjct: 84  YNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGVDIGRKKKGEAVTTEEV----KKS 139

Query: 219 QKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRRD 40
               RK   RQ    ++  LEEQF +GRLLAC+ASRPGQCGRADGYILEGKELEFY+++ 
Sbjct: 140 NHVQRKLEMRQEGRALDSHLEEQFSSGRLLACIASRPGQCGRADGYILEGKELEFYMKKL 199

Query: 39  QV*EGE 22
           Q  +G+
Sbjct: 200 QKKKGK 205


>At2g47990.1 68415.m06006 transducin family protein / WD-40 repeat
           family protein similar to Vegetatible incompatibility
           protein HET-E-1 (SP:Q00808) {Podospora anserina};
           contains 5 WD-40 repeats (PF00400); similar to  beta
           transducin-like protein HET-E2C*4
           (GP:17225206)[Podospora anserina]
          Length = 530

 Score = 31.1 bits (67), Expect = 0.29
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = -3

Query: 276 KKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVAS-RPGQC 100
           KKG KLT  ++ ++ K R ++     L  ++ A V   +EE     +L+ CV++   G+ 
Sbjct: 393 KKGLKLTRHDK-LLKKFRHKEALVSVLEEKKPANVVAVMEELVARRKLMKCVSNMEEGEL 451

Query: 99  GRADGYI 79
           G   G++
Sbjct: 452 GMLLGFL 458


>At1g73260.1 68414.m08478 trypsin and protease inhibitor family
           protein / Kunitz family protein similar to trypsin
           inhibitor propeptide [Brassica oleracea] GI:841208;
           contains Pfam profile PF00197: Trypsin and protease
           inhibitor
          Length = 215

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -3

Query: 378 LVRTKTLVKNAI-VVVDATPFRQWYESHYTLPLGRKKGAKLTEA 250
           L  T  L  NA   VVD      ++ES+Y LP+ R +G  LT A
Sbjct: 16  LALTAVLASNAYGAVVDIDGNAMFHESYYVLPVIRGRGGGLTLA 59


>At5g05240.1 68418.m00560 expressed protein similar to unknown
           protein (gb AAD32815.2)
          Length = 530

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -3

Query: 303 SHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEE 154
           SH  +P  +K+G K     +A + KKR  +   +     RLA   G L E
Sbjct: 190 SHGGIPAPKKRGRKTKINNDAAVAKKRKIERKEEVDRFARLAAPSGLLNE 239


>At1g53430.1 68414.m06056 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1030

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 17/55 (30%), Positives = 21/55 (38%)
 Frame = -3

Query: 201 YLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRRDQ 37
           YLA  R   + G+  E + T RL        G C R   Y L+    E     DQ
Sbjct: 453 YLATDRFNLINGSTPEYYKTARLSPQSLKYYGLCLRRGSYKLQLHFAEIMFSNDQ 507


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,467,893
Number of Sequences: 28952
Number of extensions: 97526
Number of successful extensions: 367
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)