Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0574
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch...    30   0.31 
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    29   0.42 
SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3 family|Schizosa...    27   2.9  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    27   2.9  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    26   5.1  
SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase |Sc...    25   9.0  
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    25   9.0  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    25   9.0  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    25   9.0  

>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 683

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 18/68 (26%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
 Frame = +2

Query: 41  VKCLGDIAFVLINTIADMKCLTIAALLFVAGLS-IAEKYTDKYDNIDVDEILENRKLLVP 217
           +KCLGD+A  + + I D  C++I   ++   +S + ++ T   + + + +  +   LL+P
Sbjct: 376 IKCLGDVALKVPSVIND--CISIFLEIYELNISYMVQEVTVVMETV-LRKYPQKIDLLLP 432

Query: 218 YIKCVLDE 241
           Y+  V++E
Sbjct: 433 YLSRVIEE 440


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = +2

Query: 218  YIKCVLDEGRCTPDGKELKAHIK-DGMQTACAKCTDKQKVSARKIVKHIK--QHEADYWE 388
            +I CVL +G        +    K +G Q  C  C D  K    +++KH+K  + E+ Y +
Sbjct: 1336 HISCVLTQGAYIDLISCITKFAKLNGNQKFCLSCVDMLKNLEHELIKHLKHMKKESVYSK 1395

Query: 389  QMKAKY 406
            +++ +Y
Sbjct: 1396 KLEEEY 1401


>SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 308 AKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYDPKD 418
           A  +D+++   R  V H K H   Y +  K  +DPKD
Sbjct: 12  AASSDEERPEMRS-VSHSKSHLEGYDDDHKIAFDPKD 47


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = -3

Query: 174 MLSYLSVYFSAIDKPATNKSAAIVRHFMSAM 82
           +++ LSVY+S   +   +K   +V+HFM+++
Sbjct: 540 LMNCLSVYYSKYFEGKDSKKFTLVKHFMNSL 570


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 575 QQQLN*IWFEFTDQKPFMISYKKKQLFCC 489
           ++Q+N + + F D K  +I  +KK++ CC
Sbjct: 529 EEQVNFLRWSF-DDKDLLIGKQKKEIICC 556


>SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 230

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 123 NKSAAIVRHFMSAMVLINTKAMSPRHLTQIQCDCSLVP 10
           + +AA+V+H + +  L N +A+   + T     C L P
Sbjct: 8   SSNAALVQHLVESKFLTNQRAIKAMNATSRSFYCPLSP 45


>SPBC1718.02 |hop1||linear element associated protein
           Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 554 WFEFTDQKPFMISYKKKQLF 495
           W  FT++ P M+SY +++ F
Sbjct: 451 WIYFTNKSPEMVSYLREKYF 470


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/31 (32%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 122 FVAGLSIAEKYTDKYDNID-VDEILENRKLL 211
           F+  ++I EKY + YD+++ VDE   ++ ++
Sbjct: 734 FLKNVAIGEKYVEPYDHMEIVDETTGDKAVI 764


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 330 RCQPERSLNTLSSTKLITGSR*RPNMIPKMNSK 428
           +  PE    ++S T+  T  +  P+ +PKMN K
Sbjct: 432 KVNPEPHSESISDTRPSTPRKVPPSTVPKMNPK 464


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,509,264
Number of Sequences: 5004
Number of extensions: 50474
Number of successful extensions: 127
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)