Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0574
(626 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0315 + 22318155-22318210,22319743-22319769,22319868-223199... 30 1.3
08_02_0981 + 23266174-23266689,23268389-23268549,23269068-232693... 30 1.7
05_01_0162 - 1095020-1095202,1096114-1096188,1096939-1097039,109... 29 2.3
12_02_0814 - 23410278-23411854,23411933-23412166,23412688-234127... 28 7.0
10_08_0618 + 19307658-19308584,19308690-19309082 28 7.0
02_01_0135 + 967172-967229,968316-968657,968936-969015,969063-96... 28 7.0
11_01_0779 + 6518556-6518601,6519825-6519967,6520091-6520114,652... 27 9.2
01_06_1125 + 34683184-34684776 27 9.2
>11_06_0315 +
22318155-22318210,22319743-22319769,22319868-22319990,
22320867-22321110,22321487-22321981
Length = 314
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/67 (22%), Positives = 29/67 (43%)
Frame = +2
Query: 236 DEGRCTPDGKELKAHIKDGMQTACAKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYDPK 415
++ + D KELK +KD + K +D+ K + K V + + + + P
Sbjct: 227 EQKKALKDSKELKKALKDSKEQGSQKDSDELKPKSNKRVTFAEVEPEKELKASNSDWHPT 286
Query: 416 DEFKEIY 436
E+ +Y
Sbjct: 287 SEYHSVY 293
>08_02_0981 +
23266174-23266689,23268389-23268549,23269068-23269309,
23270180-23270284,23270746-23270902,23271860-23272028,
23272598-23272638,23273151-23273216,23273524-23273779
Length = 570
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 335 SARKIVKHIKQHEADYWEQMKAKYD-PKDEFKEIYEGFLAGQN*TCYKCLRWYNRI 499
S K +KHI ++ + + ++ KYD P D FK + + +A + +C C+ +I
Sbjct: 374 SIAKTMKHIASNQEAFNQSLRWKYDGPSDSFKALID--MAAVHSSCRLCIHVATKI 427
>05_01_0162 -
1095020-1095202,1096114-1096188,1096939-1097039,
1097467-1097577,1097704-1097807,1098260-1098493,
1098583-1099304
Length = 509
Score = 29.5 bits (63), Expect = 2.3
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Frame = +2
Query: 302 ACAKCTDKQKVSARKIVKHIKQHEADYWEQMKA-KYDPKDEFKEIYE----GFLAGQN*- 463
A A+ D+ + R + I + +DY E M+ K K+EF + GF G +
Sbjct: 238 AAARAYDRAAIKFRGVEADINFNLSDYEEDMRQMKSLSKEEFVHVLRRQSTGFSRGSSKY 297
Query: 464 ---TCYKCLRWYNRIIVFFCKKS 523
T +KC RW R+ F KK+
Sbjct: 298 RGVTLHKCGRWEARMGQFLGKKA 320
>12_02_0814 -
23410278-23411854,23411933-23412166,23412688-23412725,
23412872-23412948
Length = 641
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 87 AMVLINTKAMSPRHLTQIQCDCSLVP 10
A VL N A+SPR L + DC ++P
Sbjct: 269 ATVLGNQPALSPRDLVAVIVDCGILP 294
>10_08_0618 + 19307658-19308584,19308690-19309082
Length = 439
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 176 DVDEILENRKLLVPYIKCVLDEG-RCTPDGKELKAH 280
D DEI E+ +PY+K V+ EG R P G + AH
Sbjct: 321 DHDEITEDDTQKMPYLKAVILEGLRKHPPGHFVLAH 356
>02_01_0135 +
967172-967229,968316-968657,968936-969015,969063-969698,
969819-971527,971563-972514,972821-973273,974303-974497
Length = 1474
Score = 27.9 bits (59), Expect = 7.0
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = +2
Query: 140 IAEKYTDKYDNIDVDEILENRKLLVPYIKCVLDEGRCTPDGKELKAHIKDGMQTACAKCT 319
+A + K DN + E L+ K L+ + V+DE D L+ HI+ G + A CT
Sbjct: 88 LAAAESSKIDNRPLSESLDELKELLYDAEDVMDE----LDYYRLQQHIEGGKGSTAASCT 143
Query: 320 DKQ 328
+ +
Sbjct: 144 NPE 146
>11_01_0779 +
6518556-6518601,6519825-6519967,6520091-6520114,
6520140-6520286,6521957-6522142,6522232-6522490,
6522738-6522969,6523081-6523231,6523322-6523499,
6523916-6524191,6524414-6524642,6524754-6524904,
6525013-6525192
Length = 733
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/87 (18%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = +2
Query: 143 AEKYTDKYDNIDVDEILENRKLLVPYIKCVLDEGRCTPDGKELKAHIKD-GMQTACAKCT 319
+ + T +Y +++ D+IL+ ++ + + CV + + P E+ + D G +
Sbjct: 404 SSQITSRYPSLEEDDILQAKRCIESGLNCVETDPKKRPTISEIIVKLTDKGTEVKQGVLP 463
Query: 320 DKQKVSARKIVKHIKQHEADYWEQMKA 400
+ + V+ +K++ + D Q +A
Sbjct: 464 NGELVAVKKLLDSVTAVNQDKQFQSEA 490
>01_06_1125 + 34683184-34684776
Length = 530
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/32 (34%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Frame = +2
Query: 365 QHEADYWEQMKAK-YDPKDEFKEIYEGFLAGQ 457
+ A Y+E+MKAK + P+ + +E+ + +L+G+
Sbjct: 475 EESAKYYEEMKAKGFPPEKKTEEMIQAWLSGR 506
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,747,835
Number of Sequences: 37544
Number of extensions: 306441
Number of successful extensions: 712
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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