Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0574
         (626 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB209296-1|BAD92533.1|  383|Homo sapiens syntaxin 16 isoform a v...    31   3.3  
BC068507-1|AAH68507.1|  778|Homo sapiens chromosome 11 open read...    31   4.4  
AK027207-1|BAB15691.1|  724|Homo sapiens protein ( Homo sapiens ...    31   4.4  

>AB209296-1|BAD92533.1|  383|Homo sapiens syntaxin 16 isoform a
           variant protein.
          Length = 383

 Score = 31.1 bits (67), Expect = 3.3
 Identities = 24/62 (38%), Positives = 33/62 (53%)
 Frame = +3

Query: 255 PMGRNLKLISKTECRQRVRSVQINRRCQPERSLNTLSSTKLITGSR*RPNMIPKMNSKKS 434
           P+GR+   +S  ECR  V +V  NR+ + ERS  TL+ +   TG         K N+KKS
Sbjct: 323 PLGRSSSCLSPLECRVPVCNVFANRK-KSERSSYTLACSVPGTGG--------KKNNKKS 373

Query: 435 TR 440
            R
Sbjct: 374 KR 375


>BC068507-1|AAH68507.1|  778|Homo sapiens chromosome 11 open reading
           frame 63 protein.
          Length = 778

 Score = 30.7 bits (66), Expect = 4.4
 Identities = 18/80 (22%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
 Frame = +3

Query: 237 TKAAALPMGRNLKLISKTECRQRVRSVQINRRCQPERSLNTLSSTKLITGSR*RPNMIPK 416
           TK++ +P G+   +++  +  +R   ++I ++C+ +  L + S+T+ +T S+   N  P+
Sbjct: 338 TKSSNVPRGQPSDMVNDHQPSRRPAKLKIRKQCKHQNGLKS-STTEEVTASQGNQNNPPR 396

Query: 417 -MNSKKSTRDSSLVKTKLVI 473
              ++    D+S     +VI
Sbjct: 397 QQQNQNKPLDTSTKPESIVI 416


>AK027207-1|BAB15691.1|  724|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ23554 fis, clone LNG09359. ).
          Length = 724

 Score = 30.7 bits (66), Expect = 4.4
 Identities = 18/80 (22%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
 Frame = +3

Query: 237 TKAAALPMGRNLKLISKTECRQRVRSVQINRRCQPERSLNTLSSTKLITGSR*RPNMIPK 416
           TK++ +P G+   +++  +  +R   ++I ++C+ +  L + S+T+ +T S+   N  P+
Sbjct: 284 TKSSNVPRGQPSDMVNDHQPSRRPAKLKIRKQCKHQNGLKS-STTEEVTASQGNQNNPPR 342

Query: 417 -MNSKKSTRDSSLVKTKLVI 473
              ++    D+S     +VI
Sbjct: 343 QQQNQNKPLDTSTKPESIVI 362


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,828,358
Number of Sequences: 237096
Number of extensions: 1735340
Number of successful extensions: 3128
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3128
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6804036910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)