Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0574
         (626 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g06280.1 68414.m00664 LOB domain family protein / lateral org...    31   0.47 
At5g40410.1 68418.m04901 pentatricopeptide (PPR) repeat-containi...    29   1.9  
At3g24260.1 68416.m03047 hypothetical protein                          29   1.9  
At2g28550.2 68415.m03469 AP2 domain-containing transcription fac...    29   3.3  
At2g28550.1 68415.m03468 AP2 domain-containing transcription fac...    29   3.3  
At5g55180.1 68418.m06879 glycosyl hydrolase family 17 protein si...    28   5.8  
At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) seve...    27   7.7  
At1g11950.1 68414.m01381 transcription factor jumonji (jmjC) dom...    27   7.7  

>At1g06280.1 68414.m00664 LOB domain family protein / lateral organ
           boundaries domain family protein (LBD2) nearly identical
           to SP|Q9LNB9 Putative LOB domain protein 2 {Arabidopsis
           thaliana}; similar to lateral organ boundaries (LOB)
           domain-containing proteins from Arabidopsis thaliana
          Length = 206

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 4   RNRNEAAVTLNLSQVSG*HRFCVD*HHCRHEVSNNC 111
           RN N  ++T N+S  S  H+ C    H R + +N C
Sbjct: 4   RNSNNTSITSNISNNSSSHQACASCKHQRKKCNNEC 39


>At5g40410.1 68418.m04901 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1155

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +2

Query: 284 KDGMQTACAKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYDPKDEFKEIYEGF 445
           +  M TACA+C D   V ARK+ + + + +   W  M + Y    E +E    F
Sbjct: 177 RTAMVTACARCGD--VVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVF 228


>At3g24260.1 68416.m03047 hypothetical protein
          Length = 374

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
 Frame = +2

Query: 158 DKYDNIDVDEILENRKLLVPYIKCVL----DEGRCTPDGKELKAHIKDGMQTACAKCTDK 325
           D  +  + + IL N   ++P I+ V     D  R   D  E K  + + ++    + T  
Sbjct: 53  DHDEKPEENPILLNEPKMIPRIRIVYKPKDDVERKMKDRLEAKQKLTELLKAIEERLTRS 112

Query: 326 QKVSARKIVKHIKQHEADYWEQMKAKYDPKDEFKEIYEGFL 448
           +      + K  K H  DY + +K+     D++K +Y+ F+
Sbjct: 113 ELRVYTCLCKDFKSHRIDYSQFVKSLQRLIDKYKNLYQRFV 153


>At2g28550.2 68415.m03469 AP2 domain-containing transcription factor
           RAP2.7 (RAP2.7) nearly identical to AP2 domain
           transcription factor RAP2.7 (GI:2281639) [Arabidopsis
           thaliana]
          Length = 381

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
 Frame = +2

Query: 302 ACAKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYD-PKDEFKEIYE----GFLAGQN*- 463
           A A+  D+  +  R +   I     DY E MK   +  K+EF  I      GF  G +  
Sbjct: 187 AAARAYDRAAIKFRGVDADINFTLGDYEEDMKQVQNLSKEEFVHILRRQSTGFSRGSSKY 246

Query: 464 ---TCYKCLRWYNRIIVFFCKKS 523
              T +KC RW  R+  F  KK+
Sbjct: 247 RGVTLHKCGRWEARMGQFLGKKA 269


>At2g28550.1 68415.m03468 AP2 domain-containing transcription factor
           RAP2.7 (RAP2.7) nearly identical to AP2 domain
           transcription factor RAP2.7 (GI:2281639) [Arabidopsis
           thaliana]
          Length = 449

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
 Frame = +2

Query: 302 ACAKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYD-PKDEFKEIYE----GFLAGQN*- 463
           A A+  D+  +  R +   I     DY E MK   +  K+EF  I      GF  G +  
Sbjct: 187 AAARAYDRAAIKFRGVDADINFTLGDYEEDMKQVQNLSKEEFVHILRRQSTGFSRGSSKY 246

Query: 464 ---TCYKCLRWYNRIIVFFCKKS 523
              T +KC RW  R+  F  KK+
Sbjct: 247 RGVTLHKCGRWEARMGQFLGKKA 269


>At5g55180.1 68418.m06879 glycosyl hydrolase family 17 protein
           similar to elicitor inducible chitinase Nt-SubE76
           GI:11071974 from [Nicotiana tabacum]
          Length = 460

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = +2

Query: 194 ENRKLLVPYIKCVLDEGRCTPDGKELKAHIKDGMQTACAK 313
           +N++ +VP    ++ +  C  +GK  K  +++G+  AC +
Sbjct: 355 DNKEKVVPVKPSLVGQTWCVANGKTTKEKLQEGLDYACGE 394


>At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) several
           40S ribosomal protein S26
          Length = 130

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 263 KELKAHIKDGMQTACAKCTDKQKVSARKIVKHIKQHEA 376
           K  + H+K    + C KC  K K   R IV++I +  A
Sbjct: 12  KHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAA 49


>At1g11950.1 68414.m01381 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam domain, PF02373:
           jmjC domain; non-consensus TG acceptor splice site at
           exon boundary 79262
          Length = 880

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = +1

Query: 1   CRNRNEAAVTLNLSQVSG*HRFCVD*HHCRHEVSNNCCTFIRGGLIDCR 147
           C N          + +   HR C     C +E+  NCC  IRGG +  R
Sbjct: 314 CSNEERVFCNHCATSIVDLHRSCPK---CSYELCLNCCQEIRGGWLSDR 359


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,969,148
Number of Sequences: 28952
Number of extensions: 259303
Number of successful extensions: 670
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)