Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0573
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    26   5.4  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   7.1  
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma...    25   7.1  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    25   7.1  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   7.1  

>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 379 FSYNILIGGRERFLENTTIELLEAER 456
           FS+N+  G R RF+E+ T+   E  R
Sbjct: 469 FSFNVAQGARLRFVEDNTLSPEELSR 494


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 209  RIITGAMKSSPVTALQVECVDPPLHLRRQYLSDK 108
            R+I   + +  +TA+ +EC+  P++ R   L+DK
Sbjct: 942  RVIQVFIYACILTAVIIECIATPIYERDHLLNDK 975


>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 488 LKSWLDNNGLSLSASKSSIVVFSRKRSLPPISI 390
           LKS  +NN + LS  K  I +   K+++PP  +
Sbjct: 189 LKSSTENNLVILSIDKEVISLSQEKQNIPPSDV 221


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 557 LLMYTCNKDIHKACLSLRNSFLTLKSWLDNNGLSLSASKS 438
           L +   NK   +  +S  NS +  +S   +NGLSL A K+
Sbjct: 601 LKLNEANKKYQELAISFENSNVKTQSVEPDNGLSLEALKN 640


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 458  SLSASKSSIVVFSRKRSLPPISILYENELICSLAG 354
            S+S  K + ++  R  S PP++I    E++C L G
Sbjct: 3209 SVSDIKKAHLIELRSLSRPPMAIRITMEVVCKLLG 3243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,716,688
Number of Sequences: 5004
Number of extensions: 55699
Number of successful extensions: 145
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)