Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0573
(649 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0927 + 20871487-20871903,20872667-20872812,20873204-208733... 34 0.085
01_06_0384 + 28906632-28907333 29 2.4
08_02_0501 + 17836948-17837373,17837857-17839184,17839270-178393... 29 3.2
01_01_0998 - 7894254-7894515,7895133-7895270,7896049-7896246,789... 29 3.2
06_03_1119 + 27760412-27760527,27760851-27761010,27761283-277614... 28 7.4
05_01_0254 - 1938343-1938447,1938545-1938700,1939209-1939472,193... 28 7.4
01_07_0321 + 42715969-42716233,42716320-42716399,42716545-427166... 28 7.4
06_01_0404 + 2892750-2892984,2893118-2893327,2893415-2893837,289... 27 9.7
>04_03_0927 +
20871487-20871903,20872667-20872812,20873204-20873301,
20873378-20873572,20873670-20873797,20873892-20874050,
20875119-20875223,20875449-20875559,20875653-20875790,
20875909-20876091,20876362-20876517,20876615-20876738,
20876820-20877030,20877614-20877729,20877828-20878053,
20878218-20878311,20879198-20879275,20879822-20879971,
20880086-20880292,20880584-20880788,20880990-20881096
Length = 1117
Score = 34.3 bits (75), Expect = 0.085
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = -3
Query: 236 LDTIQSKSLRIITGAMKSSPVTALQVECVDPPLHLRRQYLSDKF 105
L I +KSLR+IT A SSPV+ + + +DP + + Y S F
Sbjct: 187 LGVIDNKSLRLITDASVSSPVSREKAQGLDPSMREKVIYSSPNF 230
>01_06_0384 + 28906632-28907333
Length = 233
Score = 29.5 bits (63), Expect = 2.4
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Frame = -3
Query: 533 DIHKACLSL-RNSFLTLKSWLDNNGLSLSASKSSIVVFSRKRSLPPISILYENELICSLA 357
D C+ L R +L + + G ++S ++ R S +L E I
Sbjct: 33 DDKSLCIELLRRKYLVHGGFFQHKGGNVSQFWRGLLNIKRWMSFGSEWVLGNGESISFWQ 92
Query: 356 GVWWGAHPFNLKLLYNAIVR 297
VWWG P LK L+ AI R
Sbjct: 93 DVWWGTCP--LKTLFPAIFR 110
>08_02_0501 +
17836948-17837373,17837857-17839184,17839270-17839380,
17839719-17839998,17840275-17840396,17840451-17840556,
17840814-17841020,17841130-17841255,17841719-17841817,
17842265-17842456,17842555-17843073
Length = 1171
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = -3
Query: 374 LICSLAGVWWGAHPFNLKLLYNAIVRSVLDYGTFLLQPGDVNAFKKLDTIQSKSLRIITG 195
L CS+AGV +G P +++ Y I +D G Q G V + + + R++ G
Sbjct: 449 LKCSIAGVAYGNRPIEVQMPYGGIEEECVDIG----QKGAVKSVRPVKGFNFTDDRLMNG 504
>01_01_0998 -
7894254-7894515,7895133-7895270,7896049-7896246,
7896334-7896786,7896877-7897098,7898100-7898227,
7899325-7899432
Length = 502
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 97 NPDSKSALQALANFPFKSQPIYPILLDC 14
+P + L ++A FP+ +P+Y IL DC
Sbjct: 57 SPSTSQFLVSVAYFPWSIKPVYGILSDC 84
>06_03_1119 +
27760412-27760527,27760851-27761010,27761283-27761449,
27761525-27761629,27762097-27762864,27762942-27763131,
27763763-27763940,27764106-27764497
Length = 691
Score = 27.9 bits (59), Expect = 7.4
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = -3
Query: 488 LKSWLDN-NGLSLSASKSSIVVFSRKRSLPPISILYENELICSLA 357
+ SW N + LSLS S SSI +S K + PI +LY NE + L+
Sbjct: 244 IASWPSNGSNLSLS-SLSSICCYSLKEGILPI-VLYFNEPVKGLS 286
>05_01_0254 -
1938343-1938447,1938545-1938700,1939209-1939472,
1939563-1939777,1939863-1940672,1941758-1942388
Length = 726
Score = 27.9 bits (59), Expect = 7.4
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Frame = -3
Query: 620 YTCDLEETXGNQVRIL--QYADDLLMYTCNKDIHKACLSLRNSFLTLKSWLDNNGLSLSA 447
YT +L+E N V I + +DD T + KA S +N+ ++K W D NG L
Sbjct: 376 YTEELDELFSNAVNIAKDETSDDSGRCTLRSSL-KAVGS-KNAGHSVK-WADENGSVLET 432
Query: 446 SKSSIVVFSRKRSLPPISILYENELICSLA 357
S++ + S+ + S+ E+ C+ A
Sbjct: 433 SRAFVSHSSKSQESMDSSVRRESAEACAAA 462
>01_07_0321 +
42715969-42716233,42716320-42716399,42716545-42716613,
42716710-42716791,42716902-42716996,42717129-42717203,
42717385-42717436,42717442-42717630,42717667-42717752,
42717827-42717902,42718001-42718164,42718307-42718426
Length = 450
Score = 27.9 bits (59), Expect = 7.4
Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
Frame = -3
Query: 344 GAHPFNLKLLYNAIVRSVLDYGTFLLQPGDVNAFKKLDTIQSKSLRII--TGAMKSSPVT 171
G H NLK L + V S L T L +L+ +LR I T A +
Sbjct: 303 GLHDDNLKGLLDEAV-SQLKANTRRLVRRQRRRLHRLNKYFEWNLRHIDATEAFYGATAD 361
Query: 170 ALQVECVDPPLHLRRQYLSDKFVFKSRFKECFTGSCKFS 54
+ ++ V P + + R +LSD + SR TGS + S
Sbjct: 362 SWNMKVVKPCVDIVRDFLSDDTILASRDGSSVTGSPRMS 400
>06_01_0404 +
2892750-2892984,2893118-2893327,2893415-2893837,
2894300-2894514
Length = 360
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -1
Query: 610 IWKR-PLEIK*EFFNMLMTSLCTLAIKTYI 524
IW PL + ++F LM S+C + KTY+
Sbjct: 125 IWNNGPLNTQIQWFQQLMPSICGSSCKTYL 154
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,137,824
Number of Sequences: 37544
Number of extensions: 311375
Number of successful extensions: 687
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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