Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0573
         (649 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript...    40   9e-05
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    38   2e-04
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    37   5e-04
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    36   8e-04
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    36   0.001
M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.           35   0.002
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    35   0.003
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    34   0.003
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    33   0.008
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    32   0.014
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    30   0.055
Z69980-1|CAA93820.1|  134|Anopheles gambiae GTP-binding protein ...    26   1.2  
AY391745-1|AAR28995.1|  460|Anopheles gambiae putative GPCR prot...    24   4.8  

>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1022

 Score = 39.5 bits (88), Expect = 9e-05
 Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
 Frame = -3

Query: 647 VLSPILYNI-YTCDLEETXGNQVRILQYADDLLMYTCNKDIHKACLSLRNSFLTLKSWLD 471
           VL P L+N+ Y   L  T  +   ++ +ADD+++      I     ++  S   ++ W++
Sbjct: 615 VLGPTLWNLMYNEVLGLTLYDGASLIGFADDIVLVAVGSRIDDLENTIETSINIIRQWME 674

Query: 470 NNGLSLSASKSSIVVFSRKRSLPPISILYENELICS 363
           +  L L+ SK+  ++ S  RS     I+ E   I S
Sbjct: 675 SVELQLNISKTEYILVSSHRSRQESQIIVEGHTIRS 710


>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1009

 Score = 38.3 bits (85), Expect = 2e-04
 Identities = 26/127 (20%), Positives = 59/127 (46%), Gaps = 1/127 (0%)
 Frame = -3

Query: 647 VLSPILYNI-YTCDLEETXGNQVRILQYADDLLMYTCNKDIHKACLSLRNSFLTLKSWLD 471
           VL P L+N+ Y   L        RI+ YADD+++      +    + + +    +  W+ 
Sbjct: 610 VLGPTLWNLMYDGVLRVAMVEGARIIGYADDIVLLVEGNCVDDIEILVSSQIRIIDRWMT 669

Query: 470 NNGLSLSASKSSIVVFSRKRSLPPISILYENELICSLAGVWWGAHPFNLKLLYNAIVRSV 291
           +NGL ++ +K+  ++ S  + +   +I   + ++ S   + +     + +L Y + +R  
Sbjct: 670 DNGLKIAPTKTEFIMVSSHQRIQHGAIRVGDHVVHSSRTLKYLGMVLDDRLEYTSHIRYA 729

Query: 290 LDYGTFL 270
           ++  T L
Sbjct: 730 VERATKL 736


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
            transcriptase protein.
          Length = 1049

 Score = 37.1 bits (82), Expect = 5e-04
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = -3

Query: 338  HPFNLKLLYNAIVRSVLDYGTFLLQPGDVNAFKKLDTIQSKSLR 207
            +P  +K +YN IVRSVL+Y   +  P   ++  +++ IQ K  R
Sbjct: 884  NPMCIKAVYNCIVRSVLEYSCVVWSPTTASSIARIEAIQRKLTR 927



 Score = 28.3 bits (60), Expect = 0.22
 Identities = 21/79 (26%), Positives = 35/79 (44%)
 Frame = -3

Query: 644 LSPILYNIYTCDLEETXGNQVRILQYADDLLMYTCNKDIHKACLSLRNSFLTLKSWLDNN 465
           + P+L+ ++  D+         I  +ADD  ++    +    C  L++      SW   N
Sbjct: 749 IGPLLFILFINDVTLALPPD-SISLFADDAKIFAPINNTGD-CTFLQDCIEIFCSWCKRN 806

Query: 464 GLSLSASKSSIVVFSRKRS 408
           GL++   K   V FSR RS
Sbjct: 807 GLTICIEKCYCVSFSRCRS 825


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1099

 Score = 36.3 bits (80), Expect = 8e-04
 Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
 Frame = -3

Query: 647 VLSPILYN-IYTCDLEETXGNQVRILQYADDLLMYTCNKDIHKACLSLRNSFLTLKSWLD 471
           +L P L+N +Y   L+        IL YADDL++            +   + +++  W+ 
Sbjct: 631 ILGPTLWNTMYDGVLDIALPPDAEILGYADDLVLLVPGTTPDNVKAAAEEAIISVMEWMA 690

Query: 470 NNGLSLSASKSSIVVFSRKRSLPPISI 390
            + L L+ +K+ +VV S  ++   I++
Sbjct: 691 RHHLELAPAKTEMVVISSTKAPTRITV 717


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1168

 Score = 35.5 bits (78), Expect = 0.001
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
 Frame = -3

Query: 647 VLSPILYNI-YTCDLEETXGNQVRILQYADDLLMYTCNKDIHKACLSLRNSFLTLKSWLD 471
           +L P L+NI Y   L         I+ +ADDL +         A      +   + +W+ 
Sbjct: 640 ILGPTLWNIMYDGVLAVELPEGASIVGFADDLAILAAGTIPEHAAAIAEEAVAAVNNWMV 699

Query: 470 NNGLSLSASKSSIVVFSRKRS 408
            + LSL+  K+ +++ S KRS
Sbjct: 700 QHKLSLAPEKTELLMISSKRS 720


>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
          Length = 1212

 Score = 35.1 bits (77), Expect = 0.002
 Identities = 18/87 (20%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
 Frame = -3

Query: 647 VLSPILYN-IYTCDLEETXGNQVRILQYADDLLMYTCNKDIHKACLSLRNSFLTLKSWLD 471
           +L P L+N +Y   L+        ++ YADDL++     D++    +   +  ++  W+ 
Sbjct: 698 ILGPTLWNTMYDGVLDVALPQDCEMVAYADDLVLLIPGIDVNAVKAAAEEAVASVSHWMA 757

Query: 470 NNGLSLSASKSSIVVFSRKRSLPPISI 390
            + L ++  K+  V+ S  ++   ++I
Sbjct: 758 QHHLQIAPEKTECVLISSTKNPTQVTI 784


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 34.7 bits (76), Expect = 0.003
 Identities = 17/83 (20%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
 Frame = -3

Query: 647 VLSPILYNI-YTCDLEETXGNQVRILQYADDLLMYTCNKDIHKACLSLRNSFLTLKSWLD 471
           +L P L+N+ Y   L     ++ +++ YADDL++    +   ++      +   +  W+ 
Sbjct: 650 ILGPTLWNVMYDGVLRIPLPDEAKVIGYADDLVVLAPGRTPEESAAVAEAAVSAVDQWMQ 709

Query: 470 NNGLSLSASKSSIVVFSRKRSLP 402
            + L L+ +K+ + + S  +  P
Sbjct: 710 QHHLELAPAKTEMTIISSLKHPP 732


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 34.3 bits (75), Expect = 0.003
 Identities = 22/97 (22%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
 Frame = -3

Query: 647 VLSPILYNI-YTCDLEETXGNQVRILQYADDLLMYTCNKDIHKACLSLRNSFLTLKSWLD 471
           +L P L+N+ Y   L         ++ +ADD+ +    + I +  L   +S   ++SW+ 
Sbjct: 606 ILGPTLWNVMYNGVLTLGLPPGPEVIGFADDIALTVLGESIEEIELLTSDSVSRIESWMQ 665

Query: 470 NNGLSLSASKSSIVVFSRKRSLPPISILYENELICSL 360
              L ++  K+  ++ S  +++   SI   +E I S+
Sbjct: 666 QMRLEIAHKKTEFLIISSHKTVQSGSIRVGDERIESI 702


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1222

 Score = 33.1 bits (72), Expect = 0.008
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = -3

Query: 647 VLSPILYNI-YTCDLEETXGNQVRILQYADDLLMYTCNKDIHKACLSLRNSFLTLKSWLD 471
           +L P L+NI Y   L         ++ YADD+++        +A L    +   + +W++
Sbjct: 637 ILGPTLWNIMYDGVLRVELPEGASVIGYADDIVVMARGCTPQEAALVAEQAVDAIAAWME 696

Query: 470 NNGLSLSASKSSIVVFSRKR 411
           ++ L L+  K+  V+ S  R
Sbjct: 697 DHHLQLAPEKTEGVMISSLR 716


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 32.3 bits (70), Expect = 0.014
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
 Frame = -3

Query: 647 VLSPILYNI-YTCDLEETXGNQVRILQYADDLLMYTCNKDIHKACLSLRNSFLTLKSWLD 471
           +L P L+N+ Y             I+ YADDL++         A  +   +   +K WL 
Sbjct: 706 ILGPTLWNMMYDGVFGVGLPLGAEIIGYADDLVLLVPGTTPTTAAAAAEEAVAAVKQWLL 765

Query: 470 NNGLSLSASKSSIVVFSRKRSLP 402
            + L L+ SK+ + V S  +  P
Sbjct: 766 EHRLELAHSKTEMTVISSLKQPP 788


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1154

 Score = 30.3 bits (65), Expect = 0.055
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
 Frame = -3

Query: 647 VLSPILYNI-YTCDLEETXGNQVRILQYADDLLMYTCNKDIHKACLSLRNSFLTLKSWLD 471
           +L P L+N+ Y   L         ++ YADDL++         A +    +   +  WL 
Sbjct: 645 ILGPTLWNVMYDGVLGVELPPGAELIGYADDLVLLAPGTTPAAAAVVAEEAVSAVDRWLR 704

Query: 470 NNGLSLSASKSSIVVFSRKRSLP 402
            + L L+ +K+ + V S  +  P
Sbjct: 705 EHHLELAHAKTEMTVISSLQQPP 727


>Z69980-1|CAA93820.1|  134|Anopheles gambiae GTP-binding protein
           protein.
          Length = 134

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 421 ENTTIELLEAERESPLLSNQDLRVRNEFLRDKQALCMSLLQ 543
           EN+T+E L   ++ P+   Q  ++  E    K   C +L Q
Sbjct: 65  ENSTLEKLAKNKQKPITLEQGEKLAKELKAVKYVECSALTQ 105


>AY391745-1|AAR28995.1|  460|Anopheles gambiae putative GPCR
           protein.
          Length = 460

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = -3

Query: 626 NIYTCDLEETXGNQVRILQYADDLLMY 546
           N+  CD+ +   +Q+ I  Y D ++++
Sbjct: 186 NVTICDMRKEYTSQMEIFNYIDTVIVF 212


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 664,139
Number of Sequences: 2352
Number of extensions: 13368
Number of successful extensions: 43
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63977715
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)