Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0573
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    45   4e-05
U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    40   0.002
Z70266-4|CAA94206.3|  534|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z74038-8|CAD21642.1|  540|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z72507-16|CAC35887.1|  540|Caenorhabditis elegans Hypothetical p...    29   3.8  
U39999-10|AAA81108.2|  306|Caenorhabditis elegans Serpentine rec...    28   5.0  
AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical ...    28   5.0  
Z83127-4|CAB05631.1|  872|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AF098995-3|AAC67483.1|  276|Caenorhabditis elegans F-box b prote...    27   8.7  
AF040646-3|AAK31541.1|  946|Caenorhabditis elegans Hypothetical ...    27   8.7  
AC084158-24|AAM15622.1|  245|Caenorhabditis elegans Hypothetical...    27   8.7  

>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 24/76 (31%), Positives = 40/76 (52%)
 Frame = -3

Query: 647 VLSPILYNIYTCDLEETXGNQVRILQYADDLLMYTCNKDIHKACLSLRNSFLTLKSWLDN 468
           V+SP L+  Y  D+         ++ YADD+ +   +K I KA   ++     +  +L  
Sbjct: 538 VISPNLFTFYLKDMPTQ--QDTMLISYADDMSIIARDKKIEKAAEKVQLHIDEIAKYLKE 595

Query: 467 NGLSLSASKSSIVVFS 420
            G+S+SA KS++ VFS
Sbjct: 596 RGMSISAEKSTVTVFS 611


>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 22/79 (27%), Positives = 39/79 (49%)
 Frame = -3

Query: 647 VLSPILYNIYTCDLEETXGNQVRILQYADDLLMYTCNKDIHKACLSLRNSFLTLKSWLDN 468
           VLSP+L+ IY  D+      +V   Q+ADD  +Y           +L+++   +  W   
Sbjct: 82  VLSPLLFGIYVNDISSILPEKVACKQFADDTKLYASTPKTESE-NNLQSALDAVVDWTKG 140

Query: 467 NGLSLSASKSSIVVFSRKR 411
           + L+L+ SK+  V   ++R
Sbjct: 141 SKLTLNQSKTVHVTVGKRR 159



 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 320 LLYNAIVRSVLDYGTFLLQPGDVNAFKKLDTIQSKSLR 207
           LLY   +R  L+YGT +  P   +  K ++++Q+   R
Sbjct: 222 LLYKTFIRPRLEYGTVVSSPTKKSDEKTIESVQNAFTR 259


>Z70266-4|CAA94206.3|  534|Caenorhabditis elegans Hypothetical
           protein C40C9.2 protein.
          Length = 534

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 590 NQVRILQYADDLLMYTCNKDIHKACLSLRN 501
           ++V    Y +D++M   NK + KACL L+N
Sbjct: 445 SKVMAESYVEDVVMTELNKYMQKACLELKN 474


>Z74038-8|CAD21642.1|  540|Caenorhabditis elegans Hypothetical
           protein F17C11.12 protein.
          Length = 540

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
 Frame = -3

Query: 461 LSLSASKSSIVVFS-RKRSLPPI---SILYENELICSLAGVWWGAHPFNLKLLYNAIVRS 294
           LS + +  +I+V S     L P    SI Y    +CS  G+ +  H F+L  LY  I   
Sbjct: 431 LSCAMTSQAIIVASIASNELMPTAIRSISYSTAQLCSRFGIVFAPHVFHLN-LYTGIDFP 489

Query: 293 VLDYGTFL 270
           VL Y   L
Sbjct: 490 VLPYAILL 497


>Z72507-16|CAC35887.1|  540|Caenorhabditis elegans Hypothetical
           protein F17C11.12 protein.
          Length = 540

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
 Frame = -3

Query: 461 LSLSASKSSIVVFS-RKRSLPPI---SILYENELICSLAGVWWGAHPFNLKLLYNAIVRS 294
           LS + +  +I+V S     L P    SI Y    +CS  G+ +  H F+L  LY  I   
Sbjct: 431 LSCAMTSQAIIVASIASNELMPTAIRSISYSTAQLCSRFGIVFAPHVFHLN-LYTGIDFP 489

Query: 293 VLDYGTFL 270
           VL Y   L
Sbjct: 490 VLPYAILL 497


>U39999-10|AAA81108.2|  306|Caenorhabditis elegans Serpentine
           receptor, class x protein95 protein.
          Length = 306

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 563 DDLLMYTCNKDIHKACLSLRN 501
           D L+M  CN DI  AC++ +N
Sbjct: 270 DGLIMLLCNNDIQPACIASKN 290


>AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical
           protein K09H9.4 protein.
          Length = 328

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -3

Query: 320 LLYNAIVRSVLDYGTFLLQPGDVNAFKKLDTIQSKSLRIITGAMK 186
           LLY   +R  L+YGT +  P   +  K ++++Q+   R +   +K
Sbjct: 192 LLYKTFIRPRLEYGTVVSSPTKKSDEKAIESVQNAFTRRLYSRIK 236


>Z83127-4|CAB05631.1|  872|Caenorhabditis elegans Hypothetical
           protein T23F6.4 protein.
          Length = 872

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = -1

Query: 97  NP-DSKSALQALANFPFKSQPIY 32
           NP D+K A +ALA   F+SQP+Y
Sbjct: 528 NPVDAKKAFRALAYSRFRSQPLY 550


>AF098995-3|AAC67483.1|  276|Caenorhabditis elegans F-box b protein
           protein 17 protein.
          Length = 276

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -3

Query: 563 DDLLMYTC-NKDIHKACLSLRNSFLTLKSWLDNNGLSLSASKSSIVVFSRK 414
           +D+L   C N +IH   LS RN  L +K W+  +  +L   +S  V FSR+
Sbjct: 201 NDILTTNCTNLEIHYQSLSDRNLNLFMKHWIRGSNPNL---QSICVNFSRE 248


>AF040646-3|AAK31541.1|  946|Caenorhabditis elegans Hypothetical
           protein H17B01.4a protein.
          Length = 946

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = -3

Query: 221 SKSLRIITGAMKSSPVTALQVECVDPPLHLRRQYLSDKF 105
           SKS+ +   + + S +TA+ VE VD PL   +Q + D+F
Sbjct: 371 SKSVNL-EWSREESLITAVSVEMVDLPLSESQQMIEDEF 408


>AC084158-24|AAM15622.1|  245|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.6 protein.
          Length = 245

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = -3

Query: 311 NAIVRSVLDYGTFLLQPGDVNAFKKLDTIQSKSLRIITGAMKSSPVTALQVECVD 147
           N+ +RS++DY    +     NA+  L  +Q   L+ I    ++ P TA Q   +D
Sbjct: 105 NSKIRSIMDYSNIQMVIAQSNAYDLLGHLQPDILKFIKQHNETFP-TAQQQRMID 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,609,619
Number of Sequences: 27780
Number of extensions: 298726
Number of successful extensions: 739
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)