Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0573
         (649 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g50720.1 68416.m05549 protein kinase, putative similar to pro...    29   3.5  
At1g63490.1 68414.m07179 transcription factor jumonji (jmjC) dom...    28   4.7  
At3g45620.1 68416.m04927 transducin family protein / WD-40 repea...    27   8.1  

>At3g50720.1 68416.m05549 protein kinase, putative similar to
           protein kinase ATN1 [Arabidopsis thaliana]
           gi|1054633|emb|CAA63387
          Length = 377

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/61 (19%), Positives = 29/61 (47%)
 Frame = -3

Query: 320 LLYNAIVRSVLDYGTFLLQPGDVNAFKKLDTIQSKSLRIITGAMKSSPVTALQVECVDPP 141
           ++Y   +++++     ++QPG  +A    D  Q +   ++  +MK   +      C++P 
Sbjct: 61  IVYKGRLKNIVPVAVKIVQPGKTSAVSIQDKQQFQKEVLVLSSMKHENIVRFVGACIEPQ 120

Query: 140 L 138
           L
Sbjct: 121 L 121


>At1g63490.1 68414.m07179 transcription factor jumonji (jmjC)
           domain-containing protein similar to PLU-1 protein
           (GI:4902724) [Homo sapiens] and PLU1 (GI:22726257) [Mus
           musculus]; similar to Retinoblastoma-binding protein 2
           (RBBP-2) (SP:P29375) {Homo sapiens}; contains Pfam
           PF02373: jmjC domain
          Length = 1116

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
 Frame = -3

Query: 260 GDVNAFKKLDTIQSKSLRIITGAMKSSPVTALQVECVD-----PPLHLRRQYLSDKFVFK 96
           G ++  KK ++ + KS +++TG++    V  L  E        P L++ RQY  D   + 
Sbjct: 570 GILDLVKKSESARDKSNKVLTGSLSLENVEELLHEFDSFSINVPELNILRQYHVDTLSWI 629

Query: 95  SRFKE 81
           SRF +
Sbjct: 630 SRFND 634


>At3g45620.1 68416.m04927 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats;  similar to
           PC326 protein  (GI:200241) (PIR2:S37694) [Mus
           musculus];Human (H326) translated mRNA - Homo sapiens,
           EMBL:HS06631
          Length = 481

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
 Frame = +1

Query: 301 TMALYKSFKLNGWAPHHTPAREQINSF------SYNILIGGRERF 417
           TM LY S    G   HH+ +R ++NS       SY + +GG + +
Sbjct: 180 TMVLYSSPFTQGCRRHHSSSRIRLNSIAIDPRNSYYLAVGGSDEY 224


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,620,717
Number of Sequences: 28952
Number of extensions: 273154
Number of successful extensions: 677
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)