Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0572
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    27   1.7  
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb...    25   6.9  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   9.1  

>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +2

Query: 191 LFYRKQFIYEKLKKIKVNDIFV*Q*NQINSE-RLKLVRQRYY 313
           +FY  +   +KL ++K+N I++ +  Q NS+ + ++VR R +
Sbjct: 628 MFYVNEKFTDKLYRVKINQIYLKEERQENSDVQEQVVRDRQF 669


>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 631

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 115 LRAAQEALEKNYRYIASLNRESTL 186
           +R+ Q  L+KNYR++ S N   T+
Sbjct: 362 IRSTQTLLDKNYRFLDSTNTGFTV 385


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 176  NQHYVLFYRKQFIYEKLKKIKVND 247
            N HY L + +  +YE+ +K+ VN+
Sbjct: 1783 NTHYYLGHHRVLMYEEEQKLPVNE 1806


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,273,570
Number of Sequences: 5004
Number of extensions: 42929
Number of successful extensions: 69
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)