Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0572
         (632 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   2.5  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   3.3  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   3.3  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   5.7  

>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -2

Query: 517 NLYSQNNASLKIYIYYFIRMYTIKIPLPL 431
           N Y+ NN     Y   +I    I +P+P+
Sbjct: 316 NYYNNNNYKKLYYNINYIEQIPIPVPVPI 344


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 502 NNASLKIYIYYFIRMYTIKIPLPL 431
           NN   K+Y  Y I +  I +P+P+
Sbjct: 110 NNNYKKLYKNYIINIEQIPVPVPV 133


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 502 NNASLKIYIYYFIRMYTIKIPLPL 431
           NN   K+Y  Y I +  I +P+P+
Sbjct: 110 NNNYKKLYKNYIINIEQIPVPVPV 133


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 368 CTYICIIKSLYMIILKIKHNIF 303
           C+Y C+ KS+    LK   N++
Sbjct: 22  CSYSCVNKSMLNSHLKSHSNVY 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,731
Number of Sequences: 438
Number of extensions: 3142
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)