Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0571
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces p...    26   3.7  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    26   4.9  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    25   6.5  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    25   6.5  
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar...    25   8.6  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    25   8.6  
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    25   8.6  

>SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 15  YCERIARINGRICRISAIIRNNTVCSCWLLKN 110
           Y +  A +  R+C  S +     VC+ WLL N
Sbjct: 273 YTQVYADLQNRLCTSSKLFGCPVVCTNWLLNN 304


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -3

Query: 246 AVPGSMDELYSGGGRCDGKNEMSVSSRTIPQSTPHGTYGT 127
           AVP S    YS        N MSVS++     +P  +Y T
Sbjct: 329 AVPVSSQRKYSASSYSAIPNAMSVSNQAFDVESPPSSYAT 368


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +2

Query: 443 THHQ--VGRTLVCLYGNKKNIYVSIKSL 520
           T HQ  VG +    YG K+NIY  +K L
Sbjct: 134 TKHQIVVGESNCSAYGMKENIYTCLKDL 161


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 274 LWKRTVDDRSGSR*YG*TLLRWRAVRW 194
           +WK  V+DRSG +  G T   W+   W
Sbjct: 558 VWKLLVNDRSGGKHEG-TFENWQLALW 583


>SPAC8F11.07c |cdc24||DNA replication protein
           Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 501

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
 Frame = +3

Query: 96  WLLKNICICILYRMFHGECSEELFEMIPTSRFYHRTARHRSRV--HPYYL---EP---LR 251
           WL K+  +  L   FH  C +  +  IP+ +           +    +YL   EP   L+
Sbjct: 75  WLTKSDAVIYLEDQFHFHCYDYYYTPIPSLKLKDSEENTCEMILHSSFYLLFHEPFNILK 134

Query: 252 SSTVRFQRSFLPRTIRLWNE---LPSTVF 329
            ST+RF +S + +   L  +   LP+T F
Sbjct: 135 GSTLRFSQSRIHQKWYLRKQIRFLPTTSF 163


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 26  DRTYQRTHL*NKCYYQE*YRMQLLVIEKYMYLYFVP 133
           DR + R    N C Y E + ++    E+Y +L  +P
Sbjct: 503 DRLFLRNQKFNVCVYDEGHYLKNRASERYRHLMSIP 538


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 179 RYHLEQFLRALPMEHTVQNTDTY 111
           RY LEQ L+  P+EH +  T+ +
Sbjct: 85  RYGLEQQLKTNPLEHPILITEPF 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,790,034
Number of Sequences: 5004
Number of extensions: 61523
Number of successful extensions: 161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)