Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0571
         (605 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0751 - 27769616-27769684,27769795-27769917,27769998-277707...    29   3.8  
01_06_1100 + 34530132-34530485,34530544-34530705                       28   6.6  
11_02_0042 - 7672565-7672729,7672902-7672977,7673409-7674132,767...    27   8.7  
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807...    27   8.7  
02_01_0171 - 1179095-1179388,1179668-1179801,1180036-1180900,118...    27   8.7  

>04_04_0751 - 27769616-27769684,27769795-27769917,27769998-27770770,
            27771407-27771773,27772104-27772217,27772307-27772403,
            27772968-27773088,27773168-27773252,27773349-27773498,
            27773630-27773746,27773819-27773905,27773981-27774049,
            27774125-27774181,27774266-27774349,27774477-27774513,
            27774721-27774869,27776053-27776538,27776743-27776886,
            27776961-27777509,27778332-27778526,27779226-27779310,
            27779570-27779670,27779689-27780360,27781101-27781433,
            27781957-27782038,27782258-27782334,27782713-27782817,
            27783810-27783944,27784437-27785159,27785882-27786663,
            27787480-27789187
          Length = 2891

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 28/80 (35%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
 Frame = +1

Query: 250  GHPQCVSRDLFCHVPSGYGMSSPPRCFPSAMTCPSSNEACGEY*TVGSGVA-----LPLA 414
            G   C SR L   VPS   +SS      S   C S NE      +  S ++     LPL 
Sbjct: 1258 GQHFCTSRSLDSAVPSASMVSSAAS--RSNSLCRSGNEPMDAGTSRRSSLSTDAGGLPLD 1315

Query: 415  LLTSMSDGNHSPSGGPYARL 474
            +LTSM+D N   S     RL
Sbjct: 1316 VLTSMADSNGQISAAVMERL 1335


>01_06_1100 + 34530132-34530485,34530544-34530705
          Length = 171

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 201 TARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVF 329
           +A+H    H   L+ L+  T + +   +   + L+NEL ST+F
Sbjct: 105 SAKHLDTAHSVVLKELKKPTGQQEARDVTNQLELFNELKSTLF 147


>11_02_0042 -
           7672565-7672729,7672902-7672977,7673409-7674132,
           7674684-7674708,7675041-7675486,7676643-7676862,
           7677609-7678459,7678697-7679555
          Length = 1121

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
 Frame = +1

Query: 157 RNCSR*YRHLVFTIAPPATGVEFIHTTWNRCGHPQCVSRDLFCHVPSGYGMSSPPRCFPS 336
           R+ S+ YR   F       G  F+  + N     + ++     H P G G +S  R F +
Sbjct: 335 RSLSQKYRPRSFN---ELVGQSFVVQSLNNAIIRERIAPAYLFHGPRGTGKTSAARIFSA 391

Query: 337 AMTCPS--SNEACG 372
           A++C +   N+ CG
Sbjct: 392 ALSCVAIGENKPCG 405


>04_01_0617 -
           8076624-8076971,8077761-8077883,8077965-8078035,
           8078108-8078360,8078613-8078768,8078854-8079770,
           8079858-8079927,8082310-8082416,8082722-8082755,
           8083621-8083940,8084031-8084820,8084890-8085046,
           8085647-8086068
          Length = 1255

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 259 QCVSRDLFCHVPSGYGMSSPPRCFPSAMTCP 351
           QCV++D        +   SPPRC PS+ +CP
Sbjct: 107 QCVAKDAAAQPEMSWPRGSPPRC-PSS-SCP 135


>02_01_0171 -
           1179095-1179388,1179668-1179801,1180036-1180900,
           1180998-1181258,1181424-1181621,1181752-1181982,
           1185337-1185648,1185750-1186247
          Length = 930

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 306 NELPSTVFPERYDMSFFKRGLWRVLNGRQRRS 401
           N+   T +  RY+M+F K G W++  G   +S
Sbjct: 899 NDSYDTKYTTRYEMAFSKLGGWKITEGAVLKS 930


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,805,940
Number of Sequences: 37544
Number of extensions: 447605
Number of successful extensions: 1082
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)