Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0571
         (605 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    23   3.1  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   4.1  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   4.1  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   4.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   4.1  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   7.1  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           21   7.1  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   7.1  

>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 180 SVSSRTIPQSTPHGTYGTKYRYIYFSITNNCIRYY 76
           S+S+RTI     H     KY Y   +  NNC + Y
Sbjct: 84  SLSNRTI-----HNNNNYKYNYNNNNYNNNCKKLY 113


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = -3

Query: 165 TIPQSTPHGTYGTKYRYIYFSITNNCIRYY 76
           ++   T H     KY Y   +  NNC + Y
Sbjct: 84  SLSNKTIHNNNNYKYNYNNNNYNNNCKKLY 113


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = -3

Query: 165 TIPQSTPHGTYGTKYRYIYFSITNNCIRYY 76
           ++   T H     KY Y   +  NNC + Y
Sbjct: 84  SLSNKTIHNNNNYKYNYNNNNYNNNCKKLY 113


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = -3

Query: 165 TIPQSTPHGTYGTKYRYIYFSITNNCIRYY 76
           ++   T H     KY Y   +  NNC + Y
Sbjct: 84  SLSNKTIHNNNNYKYNYNNNNYNNNCKKLY 113


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 458 PPDGEWLPSLMDVSNARG 405
           PPD  W P ++  +NA G
Sbjct: 104 PPDKVWKPDIVLFNNADG 121


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 603 TLLSFVSGRVCIRTHYASPL 544
           TL+   +G   +  HY SPL
Sbjct: 204 TLIGLSAGGASVHYHYLSPL 223


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 603 TLLSFVSGRVCIRTHYASPL 544
           TL+   +G   +  HY SPL
Sbjct: 75  TLIGLSAGGASVHYHYLSPL 94


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 603 TLLSFVSGRVCIRTHYASPL 544
           TL+   +G   +  HY SPL
Sbjct: 204 TLIGLSAGGASVHYHYLSPL 223


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,111
Number of Sequences: 438
Number of extensions: 4893
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)