Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0570
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa...    28   1.1  
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.5  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    27   2.5  
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    26   3.4  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    26   4.4  
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch...    25   5.9  

>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 62  PNPFDRKHSTIRQMLDRIFKE-SKMSVGRKNGLSRKGSNTSSCSNASTIS 208
           P P+D KH+ +R  L+   K  +   V R +   +K  N S+ ++AS  S
Sbjct: 56  PCPYDHKHTIVRHRLEYHLKRCNARPVERTDPYYKKDINISTSTDASESS 105


>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 403 NKIYKKYDT*YKC-SIQIILYFFLTEKLVVPLNFILNF 513
           +K +KKY     C  +++ LYFFL   + +P   + NF
Sbjct: 266 SKKFKKYQILEACRDVRMYLYFFLQIAVAIPNGGLSNF 303


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 127 ENERRQKERTVKKGQQHIVLFERLDNLRQ*ESVRIRSQ 240
           E ER+Q+E+  K  +Q  +  +++  L + E  RIR Q
Sbjct: 101 EKERQQREQEKKLREQEKIAAKKMKELEKLEKERIRLQ 138


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 313 IVCVSPFIITVCDFTTWTEKI 375
           I C   FI T C F TWT+ +
Sbjct: 127 ITCPILFIATFCFFETWTQAV 147


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +2

Query: 116 FKESKMSVGRKNGLSRKGSNTSSCSNASTISDNRKVFGF 232
           F + K+S G K  LS+    T + SNAS   D+   FGF
Sbjct: 3   FFKKKLSKG-KEILSKSNLKTHTSSNASLSIDDLNRFGF 40


>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 274

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 65  NPFDRKHSTIRQMLDRIFKESKMSVGRKNGLSRKGSN 175
           N FD KHS  R   +RI K+S+++   K       S+
Sbjct: 16  NGFDHKHSRRRGSQNRISKKSRLTYKFKRASKEHNSS 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,164,056
Number of Sequences: 5004
Number of extensions: 41324
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)