Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0570
         (566 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0297 - 7051592-7052469,7053197-7053302,7053396-7053471,705...    28   6.0  

>09_02_0297 -
           7051592-7052469,7053197-7053302,7053396-7053471,
           7053581-7053648
          Length = 375

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 24/75 (32%), Positives = 28/75 (37%), Gaps = 1/75 (1%)
 Frame = -1

Query: 290 LLHKTRQLN*TLRTDFNCERIRTLSYCRRLSRRSNRTMCC-CPFLTVRSFCRRSFSIL*K 114
           L+  TRQ N     +  C   R  SY    S   NR  CC C F    S  R  F +  K
Sbjct: 92  LVQATRQGNTNAFRELRCPARREGSYGGHTSISINRAACCSCVFFESTSSRRSCFRLDCK 151

Query: 113 SYPTSVGSSNVFCRT 69
           S   S    N   R+
Sbjct: 152 SSCRSDEQENQIMRS 166


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,822,538
Number of Sequences: 37544
Number of extensions: 228516
Number of successful extensions: 611
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)