Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0570
         (566 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6320| Best HMM Match : Exo_endo_phos (HMM E-Value=4.8)              28   4.6  
SB_2629| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.1  
SB_31228| Best HMM Match : EMP24_GP25L (HMM E-Value=0.22)              27   8.1  

>SB_6320| Best HMM Match : Exo_endo_phos (HMM E-Value=4.8)
          Length = 845

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = -1

Query: 236 ERIRTLSYCRRLSRRS--NRTMCC-CPFLTVRSFCRRSFSIL*KSYPTSVGSSNVFCRTD 66
           +R+R  S C R+SR+S  NRT+    P     + C     ++ K Y   + +S  FCR+ 
Sbjct: 23  QRVREQSICSRISRKSFANRTLFANFPMFAGGAIC--LLQLVPKPYRLQLKTSLGFCRSR 80

Query: 65  SG 60
            G
Sbjct: 81  IG 82


>SB_2629| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 538

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +2

Query: 128 KMSVGRKNGLSRKGSNTSSCSNASTISDNRKVFGFVR-S*SPF*VFNLTVSFCATNPFTV 304
           K++V R +    K S       A TI+    V GF   + SPF V NLT  FC T P+++
Sbjct: 187 KIAVTRMSNNPTKRSLKREIRTAITIAF---VIGFFFIAWSPFFVINLTYVFCPTCPYSM 243


>SB_31228| Best HMM Match : EMP24_GP25L (HMM E-Value=0.22)
          Length = 350

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/32 (37%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
 Frame = +1

Query: 121 RIENERRQKERTVKKGQQH-IVLFERLDNLRQ 213
           RIE  +RQ+E+ +++ QQH +   +++D L+Q
Sbjct: 125 RIEEIKRQQEKMLQQQQQHPVAATQQVDGLQQ 156


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,248,288
Number of Sequences: 59808
Number of extensions: 315078
Number of successful extensions: 1130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)