Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0570
         (566 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016668-2|AAO12442.1|  140|Caenorhabditis elegans Hypothetical ...    29   3.1  
AJ276590-1|CAB91651.1|  679|Caenorhabditis elegans LET-413 prote...    27   7.1  
AF068716-10|AAC17752.2|  679|Caenorhabditis elegans Lethal prote...    27   7.1  
AF068716-9|AAT81195.1|  699|Caenorhabditis elegans Lethal protei...    27   7.1  
Z73899-8|CAA98079.2|  669|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U42834-3|AAA83583.2|  860|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>AF016668-2|AAO12442.1|  140|Caenorhabditis elegans Hypothetical
           protein F36H9.8 protein.
          Length = 140

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 460 YFFLTEKLVVPLNFILNFKYTLKIR 534
           YF + +  V+PLN   +FKYTL+++
Sbjct: 8   YFLMPKFQVLPLNSQYSFKYTLRVK 32


>AJ276590-1|CAB91651.1|  679|Caenorhabditis elegans LET-413 protein
           protein.
          Length = 679

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = -1

Query: 242 NCERIRTLSYCRRLSRRSNRTMCCCPFLTVRSFCRRSFSIL*KSYPTSVGS 90
           NC+ + TL+       R   T+C C  +T+ S    S ++L    P+++GS
Sbjct: 103 NCKLLTTLNLSSNPFTRLPETICECSSITILSLNETSLTLL----PSNIGS 149


>AF068716-10|AAC17752.2|  679|Caenorhabditis elegans Lethal protein
           413, isoform a protein.
          Length = 679

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = -1

Query: 242 NCERIRTLSYCRRLSRRSNRTMCCCPFLTVRSFCRRSFSIL*KSYPTSVGS 90
           NC+ + TL+       R   T+C C  +T+ S    S ++L    P+++GS
Sbjct: 103 NCKLLTTLNLSSNPFTRLPETICECSSITILSLNETSLTLL----PSNIGS 149


>AF068716-9|AAT81195.1|  699|Caenorhabditis elegans Lethal protein
           413, isoform b protein.
          Length = 699

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = -1

Query: 242 NCERIRTLSYCRRLSRRSNRTMCCCPFLTVRSFCRRSFSIL*KSYPTSVGS 90
           NC+ + TL+       R   T+C C  +T+ S    S ++L    P+++GS
Sbjct: 103 NCKLLTTLNLSSNPFTRLPETICECSSITILSLNETSLTLL----PSNIGS 149


>Z73899-8|CAA98079.2|  669|Caenorhabditis elegans Hypothetical
           protein ZK829.10 protein.
          Length = 669

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 371 KFKINFISKIAIKFIRNMIHNINVVYKLFYIFS 469
           K K+  +    I+++RN+IH I V +  F  F+
Sbjct: 160 KIKMEAVESAEIQYLRNVIHRIGVSHMSFTNFN 192


>U42834-3|AAA83583.2|  860|Caenorhabditis elegans Hypothetical
           protein F28B4.2 protein.
          Length = 860

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 18/46 (39%), Positives = 28/46 (60%)
 Frame = +2

Query: 77  RKHSTIRQMLDRIFKESKMSVGRKNGLSRKGSNTSSCSNASTISDN 214
           R  + IR  L  +F +SK+   +K     KGS+ SSCS++S++S N
Sbjct: 685 RSATPIRTRLAEVF-DSKVFSHQK-----KGSDASSCSSSSSLSAN 724


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,216,675
Number of Sequences: 27780
Number of extensions: 240511
Number of successful extensions: 768
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)