Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0570
         (566 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20840.1 68415.m02456 secretory carrier membrane protein (SCA...    30   0.94 
At3g20520.1 68416.m02598 glycerophosphoryl diester phosphodieste...    28   3.8  
At2g14800.1 68415.m01677 hypothetical protein                          28   5.0  
At4g25340.1 68417.m03647 immunophilin-related / FKBP-type peptid...    27   8.7  
At2g24840.1 68415.m02971 MADS-box family protein                       27   8.7  

>At2g20840.1 68415.m02456 secretory carrier membrane protein (SCAMP)
           family protein contains Pfam domain, PF04144: SCAMP
           family
          Length = 282

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 73  RQKTFDDPTDVG*DFQRIENERRQKERTVKKGQQHI 180
           R  T D P D G D +  E E R+KE  +K+ +Q I
Sbjct: 40  RGATMDIPLDSGKDLKAKEKELREKEAELKRREQEI 75


>At3g20520.1 68416.m02598 glycerophosphoryl diester
           phosphodiesterase family protein contains Pfam PF03009 :
           Glycerophosphoryl diester phosphodiesterase family;
           similar to glycerophosphodiester phosphodiesterase
           (GI:1399038) [Borrelia hermsii]
          Length = 729

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +2

Query: 311 SSFVFRHLLLRCATLRHGLKKFKINFISKIAIKFIRNMIHNIN-VVYKLFYIF 466
           S+F  +H L    ++    ++ K+NFIS   I F+++M +++   V KL + F
Sbjct: 155 SAFYAKHNLSMRNSVVSLSRRLKVNFISSPGISFLKSMKNSVKPTVTKLIFRF 207


>At2g14800.1 68415.m01677 hypothetical protein
          Length = 580

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 158 SRKGSNTSSCSNASTISDNRKVFGFVR 238
           S K   TS    A+++ DNR+VFGFV+
Sbjct: 216 SAKLEVTSELKEANSLWDNREVFGFVQ 242


>At4g25340.1 68417.m03647 immunophilin-related / FKBP-type
           peptidyl-prolyl cis-trans isomerase-related immunophilin
           FKBP46 - Spodoptera frugiperda (fall
           armyworm),PIR2:A55320
          Length = 477

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = +2

Query: 68  PFDRKHSTIRQMLDRIFKESKMSVGRKNGLSRKGSNTSSCSNASTISDNRKVFGFVRS*S 247
           P D K S +R   + +  E ++S+G+ NG       T S      +  N K+F      S
Sbjct: 356 PADSKSSQVRTYPNGLIVE-ELSMGKPNGKRADPGKTVSVRYIGKLQKNGKIFDSNIGKS 414

Query: 248 PF 253
           PF
Sbjct: 415 PF 416


>At2g24840.1 68415.m02971 MADS-box family protein 
          Length = 264

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 68  PFDRKHSTIRQMLDRIFKESKMSVGRKNGLSRKGSNTSSC 187
           PF   H ++  +LDR    + MS+ +   L  +GS  +SC
Sbjct: 115 PFSFGHPSVESVLDRYVSRNNMSLAQSQQL--QGSPAASC 152


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,935,832
Number of Sequences: 28952
Number of extensions: 200670
Number of successful extensions: 621
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)