Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0569
         (699 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           30   0.016
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    25   0.79 
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   5.5  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 30.3 bits (65), Expect = 0.016
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 230 TQLPSNGGTKPFTDGHLSVAPNPPP 304
           T LPS+G T P  D  + VAP P P
Sbjct: 70  TPLPSDGTTSPEPDPEIPVAPEPAP 94


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +2

Query: 266 TDGHLSVAPNPPPRGPRVLGIHRVTMRPP 352
           TD  L    NPP   PR   + R   RPP
Sbjct: 240 TDEQLKELENPPTPKPRPTKVSRRKPRPP 268


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 203 LRLVATYLDTQLPSNGGTKPFTDGHLSVAPNPPP 304
           +R VA     ++PS   + P     +SV+P  PP
Sbjct: 66  IRPVALPPKREIPSPKRSSPILAEKVSVSPTTPP 99


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,767
Number of Sequences: 336
Number of extensions: 3301
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)