Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0569
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    29   0.85 
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    27   2.0  
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.0  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    26   6.0  
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac...    26   6.0  
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce...    25   7.9  

>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 528 RICVLTQSLTFSITLKLTQICMKLEQRPWRQTYANVP 638
           R C  ++   F++    T I +   + PWR+TYA++P
Sbjct: 136 RECQFSEGGVFALLQNDTFISITGFEEPWRKTYASIP 172


>SPBC2F12.05c |||sterol binding ankyrin repeat
            protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
 Frame = -2

Query: 362  AHSVEASL-SLDESPKL-----WAPSVEGWVPQRDVRP*RAWFHRSKEAECLDMWPLA-- 207
            AH V+ S+ S D++PK      W   + G  P  +      W +  +     ++ P A  
Sbjct: 1143 AHEVKGSVQSTDDTPKWMVNGHWNDKIFGQQPNGNKI--LLWQNHERPPRPFNLTPFAIS 1200

Query: 206  -EALAPHREAWIRPSQNYLRP 147
              AL P  + W+ P+   LRP
Sbjct: 1201 LNALTPQLKPWLPPTDTRLRP 1221


>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
 Frame = +2

Query: 272 GHLSVAPNPPPR----GPRVLGIHRVTMRPPH 355
           GH +    PPPR    GPR+ G H   +  PH
Sbjct: 92  GHRAYYAPPPPRGPLFGPRIGGGHHGPLHGPH 123


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -2

Query: 272 RP*RAWFHRSKEAECLDMWPLAEALAPHREAWIRPSQNYLRPT 144
           +P RA  H+   A  + +     ALAP     I PS NY  P+
Sbjct: 55  QPRRARRHKDAHAYDMSLTDAEPALAPVMSPAIPPSMNYPTPS 97


>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 340

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 194 ELVLRLVATYLDTQLPSNGGTKPF 265
           E VL  + T+LDT +P+N    PF
Sbjct: 312 ECVLASIETFLDTGIPTNPVNGPF 335


>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 473

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = -2

Query: 296 GWVPQRDVRP*RAWFHRSKEAECLDMWPLAEAL 198
           GWV   DV P   WF        + +W LA  +
Sbjct: 164 GWVRCVDVEPGNQWFCTGAGDRTIKIWDLASGV 196


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,658,986
Number of Sequences: 5004
Number of extensions: 52246
Number of successful extensions: 131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)