Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0569
(699 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0630 + 9964593-9964738,9965548-9965603,9965895-9966745,996... 42 5e-04
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411... 31 0.67
02_04_0468 - 23172561-23174201 31 1.2
11_04_0460 - 17955102-17955146,17955253-17955310,17955442-179555... 30 2.0
03_02_0503 + 8951824-8952642,8953159-8953770,8953938-8954042 30 2.0
12_02_0849 - 23640091-23640279,23640537-23640677,23640756-236422... 29 3.5
05_07_0228 - 28526885-28527046,28527151-28527241,28528315-285284... 29 4.7
05_03_0342 - 12704683-12704736,12704827-12704895,12704969-12706003 28 8.2
03_05_0047 - 20244899-20245203,20245442-20246438,20246561-20247700 28 8.2
>03_02_0630 +
9964593-9964738,9965548-9965603,9965895-9966745,
9966848-9967046,9967246-9967425,9967591-9967967,
9968625-9968765
Length = 649
Score = 41.9 bits (94), Expect = 5e-04
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Frame = +2
Query: 8 HEGLQMSWTGLMQAGLAPFLAIHTDQQYLIKRIKELSRGGCMSAYKWDGG-------SSD 166
H+ L G + GL P ++H D Y +KR++EL+ G C+ Y + G
Sbjct: 446 HQRLNTLMKGELIKGLLPQSSVHAD--YTVKRVQELAEGTCLKNYDYMGHGDGCGKLEKK 503
Query: 167 WDESRPPDAELVLRLVATYLD 229
W P D+ L+L L A +L+
Sbjct: 504 WISELPTDSLLLLYLFAAFLE 524
>06_03_0867 +
25534760-25539620,25540662-25540857,25540957-25541104,
25541673-25541751,25542151-25542238,25542330-25542600,
25542676-25542718,25542801-25542904,25543374-25543790
Length = 2068
Score = 31.5 bits (68), Expect = 0.67
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +2
Query: 287 APNPPPRGPRVLGIHRVTMRPPHY 358
AP PPP P L HR+ PPHY
Sbjct: 88 APTPPPPPPPPLPQHRLEPPPPHY 111
>02_04_0468 - 23172561-23174201
Length = 546
Score = 30.7 bits (66), Expect = 1.2
Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Frame = +2
Query: 5 RHEGLQMSWTGLMQAGLAPFLAIHTDQQYLIKRIKELSRGGCMSAYK--WDGGSSDWDES 178
R G + W G+ P L +H D Y L GG Y+ W GGSS S
Sbjct: 47 RRRGAPVLWP---LVGIVPTLFVHRDDIYEWGSAALLRAGGVFP-YRGTWGGGSSGVITS 102
Query: 179 RPPDAELVLR 208
P + E VLR
Sbjct: 103 APANVEHVLR 112
>11_04_0460 -
17955102-17955146,17955253-17955310,17955442-17955593,
17955888-17955993,17956101-17956222,17956766-17956834,
17956969-17957214,17957331-17957373,17957449-17957520,
17957954-17958066,17958158-17958238,17958343-17958415,
17959413-17959519,17960410-17960514,17960684-17960974,
17961621-17961707,17961774-17961842,17961917-17961973,
17962057-17962155,17962223-17962312,17962395-17962511,
17964164-17964244,17964353-17964502,17964812-17964956,
17967359-17967510,17967647-17967784,17967838-17967914,
17968032-17968134
Length = 1015
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2
Query: 170 DESRPPDAELVLRLVATYLDTQLPSNGGTKPFTDGHLSVAPNPPPRGP 313
D RPP LR V Y+ +LP+ + P + ++ P PPP P
Sbjct: 453 DPMRPPTCRYALRSVFPYVHGRLPAAYSSTPSS----TLRPAPPPAAP 496
>03_02_0503 + 8951824-8952642,8953159-8953770,8953938-8954042
Length = 511
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -2
Query: 335 LDESPK-LWAPSVEGWVPQRDVRP*RAWFHRSKEAECLDMWPLAEA 201
LD+ P W PS W P R +RP A F + A W +AEA
Sbjct: 111 LDDEPSGQWRPS---WPPYRVLRPDEARFGKEHAAAARMAWAVAEA 153
>12_02_0849 -
23640091-23640279,23640537-23640677,23640756-23642203,
23642300-23642372,23642452-23642572,23642689-23642791,
23642979-23643052,23643140-23643285,23643368-23643476,
23643580-23643704,23643989-23644342,23644440-23644503,
23644581-23645032
Length = 1132
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 232 SASFERWNQALHGRTSLCGTQPSTEGAQSFGDSSSD--NEAST 354
SA+ WN++ H + S+ + E + FGD SD NE+ T
Sbjct: 436 SANVAPWNRSSHPKKSVTNKESCKEFLEDFGDYDSDDLNESFT 478
>05_07_0228 -
28526885-28527046,28527151-28527241,28528315-28528455,
28528560-28528625,28529180-28529317,28529759-28529860,
28530156-28530236,28530314-28530383,28530598-28530674,
28531035-28531483
Length = 458
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +2
Query: 236 LPSNGGTKPFTDGHLSVA--PNPPPRGPRVLGIHRVTMRP 349
LPSNG P H + A PNP P G ++ + R M+P
Sbjct: 33 LPSNGLHAPSISTHPTNAATPNPSPPGASIVVVVRPAMQP 72
>05_03_0342 - 12704683-12704736,12704827-12704895,12704969-12706003
Length = 385
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = -3
Query: 433 EHEQRVQHVVAAPTHLNNFLLQDQHI---VWRPHCHSMNPQ-NSGPPRWR 296
+H + H A PTHL+ FL+ + V P +M P S PP +R
Sbjct: 15 KHANAIPHASARPTHLHTFLIPRRPCPPPVRPPDTPAMPPALTSNPPSFR 64
>03_05_0047 - 20244899-20245203,20245442-20246438,20246561-20247700
Length = 813
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -3
Query: 142 VSTHAPAPGQFFDPLDEILLV 80
V T P PG DPLDEI L+
Sbjct: 471 VDTSVPLPGTMEDPLDEIPLI 491
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,272,266
Number of Sequences: 37544
Number of extensions: 435080
Number of successful extensions: 1359
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1355
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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