Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0569
         (699 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)              93   2e-19
SB_54380| Best HMM Match : LEM (HMM E-Value=0.5)                       30   1.6  
SB_12804| Best HMM Match : TF_Otx (HMM E-Value=7)                      30   1.6  
SB_49825| Best HMM Match : cobW (HMM E-Value=7.6)                      30   2.1  
SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)                30   2.1  
SB_30086| Best HMM Match : LIM (HMM E-Value=0.5)                       29   4.8  

>SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1417

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 43/136 (31%), Positives = 75/136 (55%), Gaps = 8/136 (5%)
 Frame = +2

Query: 53  LAPFLAIHTDQQYLIKRIKELSRGGCMSAYKWDGG----SSDWDESRPPDAELVLRLVAT 220
           + P+L   T+Q+YL++RI+ELS+GGC+  Y+W+ G       W++    D+++V+ L  T
Sbjct: 79  IIPYLEASTNQEYLVQRIRELSKGGCLGVYRWNSGGMFRGKPWEQDLFADSQIVMHLFCT 138

Query: 221 YLDTQLPSN---GGTKPFTDGHLSVAPNPPPRGPRV-LGIHRVTMRPPHYXXXXXXXXXX 388
           Y+D++LP++      + FT  H    P+ P    +  L I+   + PPHY          
Sbjct: 139 YMDSRLPADPRFPDGRTFTGLHFLKTPDKPADARKSDLSIYMARLHPPHYKIVVKDEVYD 198

Query: 389 XCRGRNNMLHTLLMFV 436
             +GRNN+ H ++ F+
Sbjct: 199 IPKGRNNLFHAIIFFL 214


>SB_54380| Best HMM Match : LEM (HMM E-Value=0.5)
          Length = 731

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +2

Query: 170 DESRPPDAELVLRLVATYLDTQLPSNGGTKPFTDGHLSVAPNPPPRGP 313
           D  RP      +RL++  +  QL +  G+  FT  HL V P+ PP+ P
Sbjct: 215 DLPRPTPQFKHVRLLSVPIKGQLVTPSGSMEFTKNHL-VTPSAPPKPP 261


>SB_12804| Best HMM Match : TF_Otx (HMM E-Value=7)
          Length = 245

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -3

Query: 169 PVRTTSVPLVSTHAPAPGQFFDPLDEILLVSVYS*E---WSQS 50
           PV +TSVP+V+ + P P      LD+  L S +  +   WSQS
Sbjct: 183 PVPSTSVPIVNNNPPPPPTQIQSLDQQGLTSAHDQQEHRWSQS 225


>SB_49825| Best HMM Match : cobW (HMM E-Value=7.6)
          Length = 143

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +2

Query: 185 PDAELVLRLVATYLDTQLPS--NGGTKPFTDGHLSVAPNPPP 304
           PD EL L  +   L  ++P   N  T P T  H  +APNPPP
Sbjct: 79  PDDELPLEAIYETLINRVPPPPNQATLP-TGEHGRIAPNPPP 119


>SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)
          Length = 1188

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +2

Query: 206 RLVATYLDTQLPSNGGTKPFTDGHLSVAPNPPPRGPRV 319
           R    Y++T     G T P      +  P PPP  PRV
Sbjct: 650 RRFCIYMETTYGGGGNTSPIPPSAPTYGPTPPPLPPRV 687


>SB_30086| Best HMM Match : LIM (HMM E-Value=0.5)
          Length = 715

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/55 (30%), Positives = 22/55 (40%)
 Frame = -3

Query: 433 EHEQRVQHVVAAPTHLNNFLLQDQHIVWRPHCHSMNPQNSGPPRWRVGCHREMSV 269
           E    + +++A   HL NF   DQ   WRP         SG   W V   R  +V
Sbjct: 374 EEPAYLTNLLAGTDHLLNFEHADQ---WRPEAACAGQGGSGKTEWMVSMFRSRNV 425


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,075,369
Number of Sequences: 59808
Number of extensions: 446516
Number of successful extensions: 1218
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1215
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)